Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGTTCAATCCCGACCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatttgattgcttccgagctatgcagatttagtagtatattttattcctctggaaaacattgctgtacaggttcctgtatggtgacacataatggattgcgatagcattctgtgctgttcttttcag

Basic information

species Zea mays
transcript GRMZM2G025854_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025854_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g11140.2 (Oryza sativa), 5'ss of exon 2
ATCAGTTCAATCCCGACCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatttgattgcttccgagctatgcagatttagtagtatattttattcctctggaaaacattgctgtacaggttcctgtatggtgacacataatggattgcgatagcattctgtgctgttcttttcag
||||  || || ||||||||||| ||||||||||||||||| ||||| |||||  ||||||| ||||           | | |     |||| |    || |   |  || ||  |  | | |   | ||  |  | |     ||  ||  ||   |||   | |   ||   | | | || | || ||||||||||||
ATCAAGTCGATTCCGACCAAGCCCGTTGAGGGGCAGAAGACCGGGACCAGTGGGTTGAGGAAGAAGgc---------aagtacc----agctgtttt-atgttccacgatcttgcacccatttccgatacgctttttt-----tttttgggtgtgtaca---attcccttcatacatctttttttggtgttcttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211022177|gb|FL153050.1|FL153050
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|211456111|gb|FL153032.1|FL153032
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTATTCCAGCAGGAGAACTACCTTGCNTANT-GGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGC-TAATTGGATTCAG
EST: gi|211022165|gb|FL153038.1|FL153038
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTGTTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|211022178|gb|FL153051.1|FL153051
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|211022173|gb|FL153046.1|FL153046
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|211022172|gb|FL153045.1|FL153045
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAGAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|211456114|gb|FL153035.1|FL153035
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTGTTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|211022174|gb|FL153047.1|FL153047
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|211456113|gb|FL153034.1|FL153034
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTGTTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|211022175|gb|FL153048.1|FL153048
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|211456115|gb|FL153036.1|FL153036
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTGTTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|89759099|gb|DY688027.1|DY688027
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|211024619|gb|FL153052.1|FL153052
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|50333167|gb|CO528293.1|CO528293
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|74238594|gb|DT646508.1|DT646508
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
EST: gi|211022168|gb|FL153041.1|FL153041
EST:     CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAG                         GTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG
genomic: CCAAGCCAGTTGAGGGGCAGAAGACTGGGACTAGTGGCCTGAGGAAAAAGgttctccatt ... ttcttttcagGTGAAAGTATTCCAGCAGGAGAACTACCTTGCTAATTGGATTCAG