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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCATgtgagatttacatatcggcttgtctattaaaactgaccttctcactgtttgcattaccattgttcattttgcatccaattagcctgatatgtttattttcttctttcag

Basic information

species Zea mays
transcript GRMZM2G024690_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024690_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g49900.1 (Oryza sativa), 5'ss of exon 2
GATAATATTCAGTCCACTATGGCTCTTTCATGGTATTGTTGCACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCATgtgagatttacatatcggcttgtcta-ttaaaactgaccttctcactgtttgcattaccattgttcattttgcatccaattagcctgatatgtttattttcttctttcag
||| |||||||  || |||||||| |||||||| |||||||| || ||||||||||||||||| ||||||||  | ||||||||||||||||| ||| ||   ||||   || |||| |||  |   || | || ||      ||||    ||| ||   | |  | | ||| |  ||                       
GATTATATTCATCCCTCTATGGCTATTTCATGGCATTGTTGCCCGTGGAAGGTTTTCAATGCCAGCCCCTTCGCTTCCTCATGGCCGTCATgtaagaattg-gtatcaatttctctagttagtatgcacgtgcttacc--ccacatt----ttgatctgatgggtttctatttgtatgtag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211453578|gb|FL021062.1|FL021062
EST:     CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCAT                         TGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
genomic: CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCATgtgagattta ... cttctttcagTGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
EST: gi|148938797|gb|EC883136.2|EC883136
EST:     CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCAT                         TGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
genomic: CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCATgtgagattta ... cttctttcagTGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
EST: gi|148967404|gb|EE018630.2|EE018630
EST:     CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCAT                         TGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
genomic: CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCATgtgagattta ... cttctttcagTGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
EST: gi|211453584|gb|FL021068.1|FL021068
EST:     CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCAT                         TGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
genomic: CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCATgtgagattta ... cttctttcagTGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
EST: gi|211374151|gb|FL287201.1|FL287201
EST:     CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCAT                         TGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
genomic: CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCATgtgagattta ... cttctttcagTGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
EST: gi|211374152|gb|FL287202.1|FL287202
EST:     CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCAT                         TGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
genomic: CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCATgtgagattta ... cttctttcagTGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
EST: gi|211453583|gb|FL021067.1|FL021067
EST:     CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCAT                         TGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
genomic: CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCATgtgagattta ... cttctttcagTGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
EST: gi|211374159|gb|FL287209.1|FL287209
EST:     CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCAT                         TGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG
genomic: CACGCGGAAGGTTTTCAATGCCTGCCCCTTCTTTGCCTCATGGCCGTCATgtgagattta ... cttctttcagTGGGCACCATGTCATTCGATTGTTGCGGCGCCTTTACTAATTGCGTTCGAG