1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTCTTGATGCCTCTGGGGATAATCCTGGTGAGAATGTCCAGCAAGTGCCGCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAGgttttccttgtggtgcttggaagacgagttttctgttctactgtttcttatattcttatagagcgcgtcagaggataacacgtcaggtaaggtaacccaactgagttcgattttgcatgcag
species | Zea mays |
transcript | GRMZM2G024448_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAG ACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAACEST: gi|149109722|gb|EE293509.2|EE293509
genomic: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAGgttttccttg ... ttgcatgcagACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAAC
EST: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAG ACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAACEST: gi|211428173|gb|FL360594.1|FL360594
genomic: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAGgttttccttg ... ttgcatgcagACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAAC
EST: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAG ACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAACEST: gi|211324932|gb|FL352849.1|FL352849
genomic: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAGgttttccttg ... ttgcatgcagACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAAC
EST: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAG ACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAACEST: gi|148987392|gb|EE031237.2|EE031237
genomic: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAGgttttccttg ... ttgcatgcagACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAAC
EST: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAG ACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAACEST: gi|211115536|gb|FL311598.1|FL311598
genomic: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAGgttttccttg ... ttgcatgcagACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAAC
EST: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAG ACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAACEST: gi|148959084|gb|EE010572.2|EE010572
genomic: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAGgttttccttg ... ttgcatgcagACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAAC
EST: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAG ACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAACEST: gi|211448998|gb|FL341666.1|FL341666
genomic: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAGgttttccttg ... ttgcatgcagACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAAC
EST: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAG ACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAAC
genomic: GCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAGgttttccttg ... ttgcatgcagACTGTGGCCGTCCTCCTCGCCACCGGCGGCGCTGTTCTGTCGCTGATGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTGATGCCTCTGGGGATAATCCTGGTGAGAATGTCCAGCAAGTGCCGCGGCGGCAGATGCGTCAGAGCCCTCTTCTACTGCCATGCCATCTCGCAGgttttccttgtggtgcttggaagacgagttttctgttctactgtttcttatattcttatagagcgcgtcagaggataacacgtcaggtaaggtaacccaactgagttcgattttgcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG