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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTCTTAGGCGTGCCATACCCCGTTCTACTCGGCCCCTCCTTGGAGCAGACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcagtgtgcaaaggcttgcattggccactatagtagagaactataatatgagcaagtgccctgagcccctgatacattatatgaaatacctttctgtcatcag

Basic information

species Zea mays
transcript GRMZM2G024395_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211189372|gb|FL038386.1|FL038386
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         -AAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGC-
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|101390683|gb|EB817275.1|EB817275
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|78106870|gb|DV525288.1|DV525288
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|76286625|gb|DV026193.1|DV026193
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|211256988|gb|FL181068.1|FL181068
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|71440608|gb|DR821658.1|DR821658
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|93283412|gb|EB675676.1|EB675676
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCCATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|93284387|gb|EB676651.1|EB676651
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|76914671|gb|DV165630.1|DV165630
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|71435745|gb|DR816795.1|DR816795
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|89251344|gb|DY623130.1|DY623130
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|71775433|gb|DR973311.1|DR973311
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
EST: gi|101386838|gb|EB815436.1|EB815436
EST:     GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAG                         GAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC
genomic: GACATTGCAGCATTTCGTTCACCGCGGCGCCCTAGCACCCTTAACCGCAGgtaatttcag ... ctgtcatcagGAAATCCGATTTGCTGGTGAATGAGTACAAGCACACGATGGCGCTATCGCC