1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGGCGAGCTCCCTTTCTCCACGCCCTGTGTCGTGGGCCATGAGATCACTGGAGAGGTGGTTGACCATGGCACGCACACTCCTGTTGAGATCATCAACAGgtatggccgacgtgacagatctgttgggctgtcaattcgcttctgttaggcatcaggtgccgttttgggttacttctctgaaagactgaaactggaaacgtttcag
species | Zea mays |
transcript | GRMZM2G024303_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACTCCTGTTGAGATCATCAACAG GTTCCCAGTCGGAAGTCACGTCGTCGGCGCCTTCATAATGCCATGTGGGAAEST: gi|6020969|gb|AW065897.1|AW065897
genomic: CACTCCTGTTGAGATCATCAACAGgtatggccga ... aacgtttcagGTTCCCAGTCGGAAGTCACGTCGTCGGCGCCTTCATAATGCCATGTGGGAA
EST: CGCACACTCCTGTTGAGATCATCAACAG GTTCCCAGTCGGAAGTCACGTCGTCGGCGCCTTCATAATGCCATGTGGGAAEST: gi|12971826|gb|BG267677.1|BG267677
genomic: CGCACACTCCTGTTGAGATCATCAACAGgtatggccga ... aacgtttcagGTTCCCAGTCGGAAGTCACGTCGTCGGCGCCTTCATAATGCCATGTGGGAA
EST: GGAGAGGTGGCTGACCATGGCACGCACACTCCTGTTGAGATCATCAACAG GTTCCCAGTCGGAAGTCACGTCGTCGGCGCCTTCAEST: gi|20301156|gb|BQ164099.1|BQ164099
genomic: GGAGAGGTGGTTGACCATGGCACGCACACTCCTGTTGAGATCATCAACAGgtatggccga ... aacgtttcagGTTCCCAGTCGGAAGTCACGTCGTCGGCGCCTTCA
EST: ATGGCACGCACACTCCTGCTGAGATCATCAACAG GTTCCCAGTTGGAAGTCACGTCGTCGGCGCATTCATAATGCCATGTGGGAA
genomic: ATGGCACGCACACTCCTGTTGAGATCATCAACAGgtatggccga ... aacgtttcagGTTCCCAGTCGGAAGTCACGTCGTCGGCGCCTTCATAATGCCATGTGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGCGAGCTCCCTTTCTCCACGCCCTGTGTCGTGGGCCATGAGATCACTGGAGAGGTGGTTGACCATGGCACGCACACTCCTGTTGAGATCATCAACAGgtatggccgacgtgacagatctgttgggctgtcaattcgcttctgttaggcatcaggtgccgttttgggttacttctctgaaagactgaaactggaaacgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA