1 5' 3' | 2 5' 3' | 3 5' 3' |
CAAATCAGAGGGAAACCACTGTTATGTGGAGTAAATCCACTGGCCGTCCACTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttctttttatcattcactcgttttattaacattcgatatcatcaaatcttctcatcatgcttcaacaacacag
species | Zea mays |
transcript | GRMZM2G023163_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAG GAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGACATGEST: gi|88753132|gb|DY537273.1|DY537273
genomic: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttct ... aacaacacagGAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGACATG
EST: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAG GAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACEST: gi|20300207|gb|BQ163150.1|BQ163150
genomic: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttct ... aacaacacagGAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCAC
EST: CTGTATAATGCCATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAG GAGATTGGAAAATGAGCTGTCAGGCGGTAGAACCCACTTCGTGGAGACATGEST: gi|94475699|gb|EB704657.1|EB704657
genomic: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttct ... aacaacacagGAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGACATG
EST: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAG GAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGACATGEST: gi|28187593|gb|CB179203.1|CB179203
genomic: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttct ... aacaacacagGAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGACATG
EST: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAG GAGATTGGAAAATGAEST: gi|101392646|gb|EB818253.1|EB818253
genomic: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttct ... aacaacacagGAGATTGGAAAATGA
EST: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAG GAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGACATGEST: gi|22490347|gb|BU050270.1|BU050270
genomic: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttct ... aacaacacagGAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGACATG
EST: CTGTATAATGCCATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAG GAGATTGGAAAATGAGCTGTCAGGCGGTAGAACCCACTTCGTGGAGACATGEST: gi|211457288|gb|FK983850.1|FK983850
genomic: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttct ... aacaacacagGAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGACATG
EST: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAG GAGAYTGGAAAATGAGCTGTCAGGCGGTAGGACC-ACTTCGTGGAGAEST: gi|19057965|gb|BM736632.1|BM736632
genomic: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttct ... aacaacacagGAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGA
EST: CTGTATAATGCCATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAG GAGATTGGAAAATGAGCTGTCAGGCGGTAGAACCCACTTCGTGGAGACATGEST: gi|211457293|gb|FK983855.1|FK983855
genomic: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttct ... aacaacacagGAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGACATG
EST: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAG GAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGACATG
genomic: CTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttct ... aacaacacagGAGATTGGAAAATGAGCTGTCAGGCGGTAGGACCCACTTCGTGGAGACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATCAGAGGGAAACCACTGTTATGTGGAGTAAATCCACTGGCCGTCCACTGTATAATGCTATTGTGTGGATGGATGCTCGCACAAGCCCTGTTTGCAGgtcgccttctttttatcattcactcgttttattaacattcgatatcatcaaatcttctcatcatgcttcaacaacacag
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