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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCCAATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTTCACATCGgtatgctcaagcacttctctattgtcgtcaccctttcggaaatattttttaagggggaatacagtagggggtcccttttggaattattagtgacaacgtacattttctgcaccag

Basic information

species Zea mays
transcript GRMZM2G022997_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022997_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S112_67V6.1 (Physcomitrella patens), 5'ss of exon 27
GTATGCCAATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTTCACATCGgtatgct--caagcacttctctattgtcgtcaccctttcggaaatatt-----ttttaagggggaatacagtaggg------ggtcccttttggaattattagtg-acaacgtacattttctgcaccag----------------------
||||||||||||  | ||||||||  | ||||| ||||| |||||||||||||| |||||| | |    | |  ||  |||   |||       |   ||| |  |     ||||| ||   | | |   | ||      || |   |||||  || ||  |   |||  |   || | | | |  |                      
GTATGCCAATGTTCGAACACCTGAAAGACATGTTCGCACCAGGCTTTACTTCACGTCGgtaagttgctgaacgatttcctacc-tcgcatgtggtgatgaattgctagtccttttacggtttacttctagaaggtttgtcggccttatttggtgttctttctccgcaaaatgtcttgttttctcacgatattgtttggaacatatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211283788|gb|FL018042.1|FL018042
EST:     ATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTTCACATCG                         GAATCTCATATACACTCATTGATGAATGTCCTTCGTTACTGCAATTTGGAC
genomic: ATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTTCACATCGgtatgctcaa ... tctgcaccagGAATCTCATATACACTCATTGATGAATGTCCTTCGTTACTGCAATTTGGAC
EST: gi|211369658|gb|FL316930.1|FL316930
EST:     ATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTTCACATCG                         GAATCTCATATACACTCATTGATGAATGTCCTTCGTTACTGCAATTTGGAC
genomic: ATGTAAGGACACCTGAGCGCCATGTCCGCACTAGGCTTTACTTCACATCGgtatgctcaa ... tctgcaccagGAATCTCATATACACTCATTGATGAATGTCCTTCGTTACTGCAATTTGGAC