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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTCGCCATCTCTTGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAGgtgagtttattcacaattcttccattgcagctattattactcctactatatccttgaaatcacaaagaatcgcacaataagatgcagtttgtggaatacatagctctgtaacgtttacttgtaaacatgcgtttcttatcgtag

Basic information

species Zea mays
transcript GRMZM2G022866_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32940976|gb|CF045795.1|CF045795
EST:     AGAGATGCCATCAGACCAGTATGCACTGGAATTCGGAG                         CTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
genomic: AGAGATACCATCAGACCAGTATGCACTGGAATTCGGAGgtgagtttat ... cttatcgtagCTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
EST: gi|149026606|gb|EE046030.2|EE046030
EST:     TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAG                         CTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
genomic: TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAGgtgagtttat ... cttatcgtagCTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
EST: gi|56462040|gb|CK986338.1|CK986338
EST:     TGTTTCTCCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAG                         CTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
genomic: TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAGgtgagtttat ... cttatcgtagCTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
EST: gi|134769080|gb|DY742751.1|DY742751
EST:     TGTTTCTCCATCAGAGATACCATCAGACCAGTATGCACTGGAATTTGGAG                         CTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
genomic: TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAGgtgagtttat ... cttatcgtagCTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
EST: gi|24934373|gb|CA452591.1|CA452591
EST:     TGTTTCTGCATCAGAGATACCATCATACCAGTATGCACTGGAGTGCGGAG                         CTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
genomic: TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAGgtgagtttat ... cttatcgtagCTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
EST: gi|71328184|gb|DR800730.1|DR800730
EST:     TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAG                         CTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
genomic: TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAGgtgagtttat ... cttatcgtagCTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
EST: gi|78079813|gb|DV508225.1|DV508225
EST:     TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAG                         CTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
genomic: TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAGgtgagtttat ... cttatcgtagCTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
EST: gi|101399628|gb|EB821660.1|EB821660
EST:     TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAG                         CTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
genomic: TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAGgtgagtttat ... cttatcgtagCTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
EST: gi|50338487|gb|CO533613.1|CO533613
EST:     TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAG                         CTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA
genomic: TGTTTCTGCATCAGAGATACCATCAGACCAGTATGCACTGGAATTCGGAGgtgagtttat ... cttatcgtagCTTGGAAGGTGAAAGAGGAATCAAAAATAGGACAGTGCAAACGACCAGAAA