Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14245319|gb|BG873901.1|BG873901EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|113778029|gb|DW895150.1|DW895150EST: CAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: CAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|116820281|gb|EC863492.1|EC863492EST: A-CA-TGGAGTCCTATATATGATGTTG-TGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|60394682|gb|DN227552.1|DN227552EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|166554742|gb|EG174108.1|EG174108EST: CCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: CCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|166495293|gb|EG161210.1|EG161210EST: CTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: CTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|9953749|gb|BE640332.1|BE640332EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|60355643|gb|DN222616.1|DN222616EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|193502116|gb|AM937927.1|AM937927EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|14244254|gb|BG842201.2|BG842201EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTCACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|18170360|gb|BM340200.1|BM340200EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|166703203|gb|EG316942.1|EG316942EST: TCTTGACTTCTATTCAG TCCCTGTTGTGTGATCCAAACCCGAACTCCCCTGCAAAACTCAGAAGCCGC
genomic: TCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGC-AAACTCAGAAGCCGC
EST:
gi|166594291|gb|EG196233.1|EG196233EST: TTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: TTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|31250386|gb|CD219410.1|CD219410EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|33092508|gb|CF052502.1|CF052502EST: GTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: GTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|213192747|gb|FM193959.1|FM193959EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTG-CTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|60348082|gb|DN215055.1|DN215055EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|211493066|gb|FL480139.1|FL480139EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|9954028|gb|BE640611.1|BE640611EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|166603394|gb|EG306821.1|EG306821EST: GTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: GTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|166480024|gb|EG102083.1|EG102083EST: GTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGC
genomic: GTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGC
EST:
gi|74245427|gb|DT653341.1|DT653341EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
EST:
gi|6466737|gb|AW191397.1|AW191397EST: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAG TCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
genomic: ACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
1172TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCAAGACTGTTCAGCGAGAACAAGCGGGAGTACAACCGCAAAGTCCGCGAGA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
2017TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCAAGACTGTTCAGCGAGAACAAGCGGGAGTACAACCGCAAAGTCCGCGAGA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
1981TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCAAGACTGTTCAGCGAGAACAAGCGGGAGTACAACCGCAAAGTCCGCGAGA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
1174TATATGCTGATGGAAGCATCTGCTTGGATATCCTACAGAACCAGTGGAGTCCTATATATGATGTTGCTGCAATCTTGACTTCTATTCAGgtaccttgca ... tgctttgcagTCCCTGCTGTGTGATCCAAACCCGAACTCCCCTGCAAACTCAGAAGCCGCAAGACTGTTCAGCGAGAACAAGCGGGAGTACAACCGCAAAGTCCGCGAGA