Sequence
atgc intronic sequence ATGC exonic sequenceGGTCCTACCACTTGTAGTTGCCATCTCTGGGAGAGTTGGTTCAGACACACCACTTATATGCCAACAAAGCGGCATGAGAGGTGTAATTGTTGAAGAAACGgtaactactgatttcattctcttttttttttgttattacgatgggtagtgtgctgcaatttgtatcttatttttatttctgcttgaactttctttttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G020574_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g45350.2 (Oryza sativa), 5'ss of exon 3
GGTCCTACCACTTGTAGTTGCCATCTCTGGGAGAGTTGGTTCAGACACACCACTTATATGCCAACAAAGCGGCATGAGAGGTGTAATTGTTGAAGAAACGgtaactactgatttcattctcttttttttttgttattacgatgggtagtgtgctgcaatttgtatcttatttttatttctgcttga--actttctttttgtag
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GGTCCTGCCACTTGTAGTGGCAGTCTCTGGACGGGTTGGTTCAGATACACCACTTATCTGCCAACAAAGTGGCATGAGAGGTGTAATAGTAGAGGAAACGgtatctattggttccatttctacggtttccttttcttttagt------tttgtggcaagc-atatcctagc---aattttacttaaccattttcctctggtag
upper sequence: GRMZM2G020574_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g45350.5 (Oryza sativa), 5'ss of exon 3
GGTCCTACCACTTGTAGTTGCCATCTCTGGGAGAGTTGGTTCAGACACACCACTTATATGCCAACAAAGCGGCATGAGAGGTGTAATTGTTGAAGAAACGgtaactactgatttcattctcttttttttttgttattacgatgggtagtgtgctgcaatttgtatcttatttttatttctgcttga--actttctttttgtag----
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GGTCCTGCCACTTGTAGTGGCAGTCTCTGGACGGGTTGGTTCAGATACACCACTTATCTGCCAACAAAGTGGCATGAGAGGTGTAATAGTAGAGGAAACGgtatctattggttccatttctacggtttccttttcttttagt------tttgtggcaagc-atatcctagc---aattttacttaaccattttcctctggtaggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|91877173|gb|EB407130.1|EB407130EST: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTAATTGTTGAAGAAACG GCAGAGCAACACTTCCTGAAGCACAATGATGCCGGATCCTGGATTCAAGAT
genomic: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTAATTGTTGAAGAAACGgtaactactg ... ctttttgtagGCAGAGCAACACTTCCTGAAGCACAATGATGCCGGATCCTGGATTCAAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTCCTACCACTTGTAGTTGCCATCTCTGGGAGAGTTGGTTCAGACACACCACTTATATGCCAACAAAGCGGCATGAGAGGTGTAATTGTTGAAGAAACGgtaactactgatttcattctcttttttttttgttattacgatgggtagtgtgctgcaatttgtatcttatttttatttctgcttgaactttctttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA