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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAAAACTAGGCTGCTGTACCAGATGTCGCTAGACTTCGCTCCGTGGCTCAAGCACGTACCGCTCATGCACCTGCTGTGGTCACATTTCACAGAGAAGgcacgtcagtcaatgtgataaagtaatttataggaattagtgtagaatgcggctggaattggttcagaaaatgttcttgacaaatctaatatcttttcatggtggtcttgtgcag

Basic information

species Zea mays
transcript GRMZM2G020309_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020309_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 8
GAACAAAACTAGGCTGCTGTACCAGATGTCGCTAGACTTCGCTCCGTGGCTCAAGCACGTACCGCTCATGCACCTGCTGTGGTCACATTTCACAGAGAAGgcacgtcagtcaatgtgataaagtaattta-taggaattagtgtagaatgcggctggaattggttcagaaaatgttcttgacaaatctaatat-cttttcatggtggtcttgtgcag----------------------------------
||| ||||| ||| |||||||||||||||| ||  |||| ||||| |||||||||||| | ||  |||||||| | || |||||||||||    ||||||||| |||    ||| |   | || || ||  |||  | |  | |  |   |  ||    || | |   ||  |  |   |  || | |  |   || ||       ||| | |  |                                   
GAATAAAACCAGGATGCTGTACCAGATGTCCCTCAACTTTGCTCCCTGGCTCAAGCACATCCCTTTCATGCACATACTATGGTCACATTTTGGTGAGAAGgcaagtctcaaaatttt-cagagcaacttggtagtcactgatctccatgtcatctcatgttagcttgcaacttactacagtaaagttttttccgctgtttcacaccgtcgtctataagacatcaatggtaatcttgtatgatcttctgcag

upper sequence: GRMZM2G020309_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 5'ss of exon 8
GAACAAAACTAGGCTGCTGTACCAGATGTCGCTAGACTTCGCTCCGTGGCTCAAGCACGTACCGCTCATGCACCTGCTGTGGTCACATTTCACAGAGAAGgcacgtcag------tcaatgtga--------taaagtaat------------ttataggaatt--------agtgtagaatgcggctggaattggttcagaaaatgttcttgacaa---atctaatatcttttcatggtggtcttgtgcag
||| ||||| |||||||| |||| |||||| || ||||||||||| ||| ||||||| || ||  |||||||  | || |||||||||||  | |||||||   ||| |      |||  |  |        |||| |  |            | ||   | ||        | | ||| |||||| |    ||| ||   | | ||| ||  | |    |||||  ||  | |  |       || |||||
GAATAAAACCAGGCTGCTCTACCGGATGTCTCTCGACTTCGCTCCATGGATCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacctgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcag