Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGATCAAGGGCGGGACGGTGGTCAACGCGCACCTCGCGGAGGAGGCCGACGTCTACATCGAGGACGGCGTCGTCGTCGCCGTCCGCCCAGACATCCCGgtgagtgcttcatggcttacgcctccgcgagattgattggttcccaatctgtggatcccggtacgtgctcgacttgtgttaccttaggatctctacctggcacagtaatttttgtgtcttgatgtcatttctag

Basic information

species Zea mays
transcript GRMZM2G020002_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020002_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g59340.3 (Oryza sativa), 5'ss of exon 5
CCTGATCAAGGGCGGGACGGTGGTCAACGCGCACCTCGCGGAGGAGGCCGACGTCTACATCGAGGACGGCGTCGTCGTCGCCGTCCGCCCAGACATCCCGgtgagtgcttcatggcttacgcctccgcgagattgattggttcccaatctgtggatcccggtacgtgctcgacttgtgttaccttaggatctctacctggcacagtaatttttgtgtcttgatgtcatttctag
|||||||| ||||||||||||||| ||||||||||  | ||||||||||||||| ||| | |||||||||||  |||||||||| || ||  |||||||||||||||     |||||   |    |  |||| |   | | ||      || |||             |||  |||  |   ||| ||||    ||   || || | | ||    ||||| |            
CCTGATCAGGGGCGGGACGGTGGTGAACGCGCACCGGGTGGAGGAGGCCGACGTGTACGTGGAGGACGGCGTGATCGTCGCCGTGCGGCCCAACATCCCGgtgagtg-----tggctgctgatctc-tgagact---ttgctctggggttggggag----------attcggattggctcctcttgggattcggact--gcgcattgacttgc-cgtcttca------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149082368|gb|EE171552.2|EE171552
EST:     ACGTCTACATCGAGGACGGCGTCGTCGTCGCCGTCCGCCCAGACATCCCG                         GTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATG
genomic: ACGTCTACATCGAGGACGGCGTCGTCGTCGCCGTCCGCCCAGACATCCCGgtgagtgctt ... tcatttctagGTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATG
EST: gi|87152398|gb|DY397187.1|DY397187
EST:     ACGTCTACATCGAGGACGGCGTCGTCGTCGCCGTCCGCCCAGACATCCCG                         GTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATG
genomic: ACGTCTACATCGAGGACGGCGTCGTCGTCGCCGTCCGCCCAGACATCCCGgtgagtgctt ... tcatttctagGTTGATGTTGATAATGTCAGGGTAATCGACGCAACAGGAAAATATGTCATG