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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCTAGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtggaagaatattcgttgctccaaggtagaacgctttgtcacgtgaatatgtaactgagttatgtggtgttcatcccaatcacag

Basic information

species Zea mays
transcript GRMZM2G019986_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019986_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 5'ss of exon 2
AGTCTAGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggt--------------ggaagaatattcgttgctccaaggtagaacgctttgtcacgtgaatatgtaactgagttatgtggtgttcatcccaatcacag
|| || || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||              | ||||| | |  |   ||||| |||||||  || || |  || || | |   | | |          | |    | |     
AGCCTGGATCTTTCAAGGATTGATCGGATCATCCGGCGCTCCCTTGGATCACAAGgtgagaggtctctcagttgaagggaaagaacaattatctttccaatgtagaaca-ttagttaattgtatttttttatca-tcgcacttgccttagtttattt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148950927|gb|EC896559.2|EC896559
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
EST: gi|211406605|gb|FL094201.1|FL094201
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCTTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG