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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCTAGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtggaagaatattcgttgctccaaggtagaacgctttgtcacgtgaatatgtaactgagttatgtggtgttcatcccaatcacag

Basic information

species Zea mays
transcript GRMZM2G019986_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019986_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 5'ss of exon 2
AGTCTAGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggt--------------ggaagaatattcgttgctccaaggtagaacgctttgtcacgtgaatatgtaactgagttatgtggtgttcatcccaatcacag
|| || || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||              | ||||| | |  |   ||||| |||||||  || || |  || || | |   | | |          | |    | |     
AGCCTGGATCTTTCAAGGATTGATCGGATCATCCGGCGCTCCCTTGGATCACAAGgtgagaggtctctcagttgaagggaaagaacaattatctttccaatgtagaaca-ttagttaattgtatttttttatca-tcgcacttgccttagtttattt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71774724|gb|DR972602.1|DR972602
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
EST: gi|149014076|gb|EE043603.2|EE043603
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
EST: gi|91875962|gb|EB405919.1|EB405919
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
EST: gi|78089272|gb|DV517646.1|DV517646
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
EST: gi|211406605|gb|FL094201.1|FL094201
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCTTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
EST: gi|148951106|gb|EC896776.2|EC896776
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
EST: gi|148991365|gb|EE032856.2|EE032856
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
EST: gi|78112754|gb|DV531148.1|DV531148
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
EST: gi|148935256|gb|EC879293.2|EC879293
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
EST: gi|149102322|gb|EE188185.2|EE188185
EST:     AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAG                         GCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG
genomic: AGACCTTTCAAGGATCGATCGGATCATCCGGCGCTCCCTTGGATCGCAAGgtgagaggtg ... ccaatcacagGCATCCCGTTGCCTGCCGTCGAGCCCGTGCCGGAATCTAGTGTATCCAAGG