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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTTCAGAGAGTGCTGATTTCGCGCAGCTCTGTGAAGCCGAGGGGCTCAAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAGgtaaaacatcttcttgtctggtgtgcttacagattgttctgttttggctcttgttcagagcagtgcacactgaacataatttgtaaaatacag

Basic information

species Zea mays
transcript GRMZM2G019926_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019926_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g41250.1 (Oryza sativa), 5'ss of exon 2
TCCTTTCAGAGAGTGCTGATTTCGCGCAGCTCTGTGAAGCCGAGGGGCTCAAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAGgtaaaacatcttctt-gtctggtgtgcttacagattgttctgttttggctcttgtt------cagagcagtgcacactgaacataatttgtaaaatacag
| ||||| ||||| || |||||||||||||||||| ||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||  |||||||| ||||| | ||   | |  |||     | ||  || || ||       ||| || ||    || |  |   | ||| |||   ||
TTCTTTCGGAGAGCGCAGATTTCGCGCAGCTCTGTAAAGCCGAGGGGCTTACATTCATTGGACCACCACCATCTGCTATCCGAGACATGGGCGACAAGAGgtaaa-tatcttcttcgtctgatttgtgcatatgttgcctcctcttttcttttcttttttaatagaacaatgtgttctaacgaagctatgtgaaaactag

upper sequence: GRMZM2G019926_T04 (Zea mays), 5'ss of exon 3
lower sequence: AT1G03090.1 (Arabidopsis thaliana), 5'ss of exon 2
TCCTTTCAGAGAGTGCTGATTTCGCGCAGCTCTGTGAAGCCGAGGGGCTCAAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAGgta-----aaacatcttcttgtctggtgtgctt---------acagattgttctgtt-ttggctcttgttcagag-cagtgcacactgaacataatttgtaaa-atacag
|| | ||||| ||| |||| || || || |||||||| |    ||| || | |||||||||||| ||||||||||| ||  |||||||||| ||||| |||||     | |   || ||  |  |   |||||         |||  ||||| | || ||  ||||||   ||   | | | ||| ||  | | || ||||   ||  ||
TCTTGTCAGAAAGTTCTGACTTTGCCCAACTCTGTGAGGATTCGGGTCTAACATTCATTGGACCTCCAGCATCTGCTATTAGAGACATGGGTGATAAAAGgtaccattacaggcctcctattacgacttgcttcttctttgcacaagttgttattttattctctcttgaatagtttctgaggaca-tgtccctcatgtgtatttatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89250650|gb|DY622436.1|DY622436
EST:     AATTCCTTGGACCACCCAGCATCTGCAATCCGAGACATGGGCGATAAGAG                         TGCATCCCAGAGGATCATGGGTGCTGCTGGGGTGCCGCTGGTTCCAGGGTA
genomic: AATTCATTGGACCACC-AGCATCTGCAATCCGAGACATGGGCGATAAGAGgtaaaacatc ... taaaatacagTGCATCCAAGAGGATCATGGGTGCTGCTGGCGTGCCGCTGGTTCCAGGGTA
EST: gi|76284237|gb|DV023805.1|DV023805
EST:     AAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAG                         TGCATCCAAGAGGATCATGGGTGCTGCTGGCGTGCCGCTGGTTCCAGGGTA
genomic: AAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAGgtaaaacatc ... taaaatacagTGCATCCAAGAGGATCATGGGTGCTGCTGGCGTGCCGCTGGTTCCAGGGTA
EST: gi|148930589|gb|EE285251.2|EE285251
EST:     AAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAG                         TGCATCCAAGAGGATCATGGGTGCTGCTGGCGTGCCGCTGGTTCCAGGGTA
genomic: AAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAGgtaaaacatc ... taaaatacagTGCATCCAAGAGGATCATGGGTGCTGCTGGCGTGCCGCTGGTTCCAGGGTA
EST: gi|149083583|gb|EE172920.2|EE172920
EST:     AAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAG                         TGCATCCAAGAGGATCATGGGTGCTGCTGGCGTGCCGCTGGTTCCAGGGTA
genomic: AAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAGgtaaaacatc ... taaaatacagTGCATCCAAGAGGATCATGGGTGCTGCTGGCGTGCCGCTGGTTCCAGGGTA
EST: gi|148963106|gb|EE014066.2|EE014066
EST:     AAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAG                         TGCATCCAAGAGGATCATGGGTGCTGCTGGCGTGCCGCTGGTTCCAGGGTA
genomic: AAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAGgtaaaacatc ... taaaatacagTGCATCCAAGAGGATCATGGGTGCTGCTGGCGTGCCGCTGGTTCCAGGGTA
EST: gi|71432972|gb|DR814022.1|DR814022
EST:     AAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAG                         TGCATCCAAGAGGATCATGGGTGCTGCTGGCGTGCCGCTGGTTCCAGGGTA
genomic: AAATTCATTGGACCACCAGCATCTGCAATCCGAGACATGGGCGATAAGAGgtaaaacatc ... taaaatacagTGCATCCAAGAGGATCATGGGTGCTGCTGGCGTGCCGCTGGTTCCAGGGTA