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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGAGAGAGGTAATAGCTTTTGCCGGGCAACAACCTTGGGACATCGGCAGATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctccaacttctgggttttctgttccctgtcatgctacattcaattttgagttttttatttgacgttctctaagtcttgatggagatttgtgtag

Basic information

species Zea mays
transcript GRMZM2G019358_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019358_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g13970.2 (Oryza sativa), 5'ss of exon 2
GCGGAGAGAGGTAATAGCTTTTGCCGGGCAACAACCTTGGGACATCGGCAGATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctccaacttctgggttttctgttccctgtcatgctacattcaattttgagttttttatttgacgttctctaagtcttgatggagatttgtgtag
 ||||||||||| ||||||||||| || || ||| ||||||| |||||||||||||||| |||||||||||||||||||||||| || || | |||||||||||  || |    ||  |  |||| |   ||   ||  | |||| | | |||    |||   |||    || ||| | || |||   |     | |||||
TCGGAGAGAGGTGATAGCTTTTGCAGGCCAGCAATCTTGGGATATCGGCAGATTTGTCAGGACGCTGTATTTCTTCAACGGGCCACCGAATCCTCTCAAGgtttactcactgtattgggattttttttcacctcttctcgttacagtta-tttcacatttggcatt----gtgctc-atgttttgtctgttcaatctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211345090|gb|FL234331.1|FL234331
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|211345086|gb|FL234327.1|FL234327
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|211349887|gb|FL234353.1|FL234353
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|211345091|gb|FL234332.1|FL234332
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAGACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|148936820|gb|EC880961.2|EC880961
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|211345089|gb|FL234330.1|FL234330
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|211349889|gb|FL234355.1|FL234355
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|71440788|gb|DR821838.1|DR821838
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|211347484|gb|FL234337.1|FL234337
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|91055536|gb|EB165954.1|EB165954
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|211349882|gb|FL234348.1|FL234348
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|211345082|gb|FL234323.1|FL234323
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGG
EST: gi|211345087|gb|FL234328.1|FL234328
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
EST: gi|211349886|gb|FL234352.1|FL234352
EST:     GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAG                         ATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG
genomic: GATTTGTCAAGACGCTGTATTTCTTCAACGGGCCTCCAAACCTTCTCAAGgtttcgtctc ... atttgtgtagATTGTAGAATCTATCATCAGCAGTTTCACTGGACCTGCTTCTAGTGAAGTG