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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCCATGTACAATGCTGAAAAGATAGGGAAACGTCAGGTCATGATCAGGCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctcctcaaccttatgcccatttgaattgcttcattctgaggatacgcccctgattattattgttctatattag

Basic information

species Zea mays
transcript GRMZM2G018228_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018228_T04 (Zea mays), 5'ss of exon 2
lower sequence: AT1G07770.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGTCCATGTACAATGCTGAAAAGATAGGGAAACGTCAGGTCATGATCAGGCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctcctcaacc--ttatgcccatttgaattgcttca----ttctgaggatacgcccctgattattattgttctatattag------
|||  ||||||||||||||| ||   ||| ||  | ||||||||||||||||| || ||||| ||||| |||||||| ||||  |||||||||   || |||  |     | || |   || |    | | ||  | | | |     || || | |   ||    |||||  | |||    || |       
AAGAGCATGTACAATGCTGAGAAACGAGGCAAGAGGCAGGTCATGATCAGGCCTTCCTCCAAAGTGATTATCAAGTTTCTGATTGTCATGCAGAAGCACGgtatgattatcccaccagattttatataatagagattcctaagattctcggatgttgttccttaaattat-gtggttaccaatcaaatgcag

upper sequence: GRMZM2G018228_T04 (Zea mays), 5'ss of exon 2
lower sequence: AT5G59850.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGTCCATGTACAATGCTGAAAAGATAGGGAAACGTCAGGTCATGATCAGGCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagcc--ctcctcaaccttatgcccattt--gaattgcttcattctgaggatac-gcccctgatta-ttattgttctatattag------------
|||   |||||||||||||| |||| ||||||  | || |||||||||||||| || || || |||||||||||||| || |  |||||||||   || |||  |      |  ||   ||  || |||||    |||   | ||      ||| | |    |||| |  | || |   || || |            
AAGAGTATGTACAATGCTGAGAAGAGAGGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgatcctgcattgtttagctcattttcacattttgtaataaccttgattctgtgtttgatcaactgttttaacatttttgatgaaactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24934676|gb|CA452894.1|CA452894
EST:     GCCGTCATCCAAGG-GATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
EST: gi|18384865|gb|BM418064.1|BM418064
EST:     CCGTCATCCAAGGATAAACATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGTGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
genomic: CCGTCATCCAAGG-TGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
EST: gi|18384866|gb|BM418065.1|BM418065
EST:     GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGTGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
EST: gi|18384863|gb|BM418062.1|BM418062
EST:     GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGTGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
EST: gi|16746125|gb|BM032555.1|BM032555
EST:     GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGTGAGTTCGAGTACGTGGATG-CCACAGAGCTGGGAAGATCG
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG