Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGATCAGGCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctcctcaaccttatgcccatttgaattgcttcattctgaggatacgcccctgattattattgttctatattag

Basic information

species Zea mays
transcript GRMZM2G018228_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018228_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT1G07770.1 (Arabidopsis thaliana), 5'ss of exon 2
---------------------------------------GTCATGATCAGGCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctcctcaacc--ttatgcccatttgaattgcttca----ttctgaggatacgcccctgattattattgttctatattag------
                                       |||||||||||||| || ||||| ||||| |||||||| ||||  |||||||||   || |||  |     | || |   || |    | | ||  | | | |     || || | |   ||    |||||  | |||    || |       
AAGAGCATGTACAATGCTGAGAAACGAGGCAAGAGGCAGGTCATGATCAGGCCTTCCTCCAAAGTGATTATCAAGTTTCTGATTGTCATGCAGAAGCACGgtatgattatcccaccagattttatataatagagattcctaagattctcggatgttgttccttaaattat-gtggttaccaatcaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6695513|gb|AW288621.1|AW288621
EST:     GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
EST: gi|28983576|gb|BQ538659.2|BQ538659
EST:     GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
EST: gi|31405657|gb|CD484389.1|CD484389
EST:     GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
EST: gi|211189028|gb|FL363949.1|FL363949
EST:     GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATG                         GCTAMATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG
genomic: GCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagccctc ... tctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCG