Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCATTCACATTTGGTCCTGATAAAGTTTCAGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGGTTGTTGTGTTCTTAAAGATgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattgcttgattgatctccag

Basic information

species Zea mays
transcript GRMZM2G017982_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017982_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g57450.2 (Oryza sativa), 5'ss of exon 2
--------------------TTTCATTCACATTTGGTCCTGATAAAGTTTCAGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGGT-TGTTGTGTTCTTAAAGATgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattgcttgattgatctccag
                    | ||||  ||||| || || || ||||| || ||||||||||||||||||||||| ||||| ||||| ||||| ||||||||      || ||  ||  |  ||||||  |||||    |      ||| ||||| ||  ||   | | ||||  | |||| |||||| ||||                 
GGCTATGAATGATCGAGGTGTCTCATATACATTCGGGCCAGACAAAGTGTCTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatgctcacaattacctgacctttttatttttct------taccaagtgaattgatttatcagttat--tcttgccttgttggaattcag--------------

upper sequence: GRMZM2G017982_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA10G30970.1 (Glycine max), 5'ss of exon 2
--------------------TTTCATTCACATTTGGTCCTGATAAAGTTTCAGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGGTTGTTGTGTTCTTAAAGATgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattgctt-gattgatctccag
                    ||||||  ||||||||| ||||||| || ||||| |||||| |||| ||||||||||| ||||| || || || |||||||||    |   ||       |||  | |  | |||    |     |      ||  |   || |   | |||    ||| ||   | ||| | ||  || | |       
GGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAACATGATTTGGATCTTATTTGTCGTGCTCATCAGgttaaact-ccctgcctttggtgttcaatgtgttatgccaagtcttctgggttgagtttgta-tccccatatttaattg-atgactaaaagtactgagactta-------

upper sequence: GRMZM2G017982_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA20G36510.1 (Glycine max), 5'ss of exon 2
--------------------TTTCATTCACATTTGGTCCTGATAAAGTTTCAGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGGTTGTTGTGTTCTTAAAGATgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattgcttgattgatctccag
                    ||||||  ||||||||| ||||||| || ||||| |||||| | || ||||||||||| ||||| || || || |||||||||       || |     ||||  | |  | |||    | |  || ||  ||  |       |   |  ||    ||| ||   | ||| | ||  ||    ||    
GGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAAAAACATGATTTGGATCTTATTTGTCGTGCTCATCAGgttaa---actcctgcctttgtgttcaatgtgttatgcca-agtcttcagggttgagtttgtatccccaaatttagttg-atgactaaaagtact--atgagactta--

upper sequence: GRMZM2G017982_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv14s0036g00370.t01 (Vitis vinifera), 5'ss of exon 2
--------------------TTTCATTCACATTTGGTCCTGATAAAGTTTCAGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGGTTGTTGTGTTCTTAA--AGATgtgacctacttattacct----tataaactacaaagtgtatcaatagtttactta--tgctttt-gcattgttgaaattgcttgattgatctccag
                    |||| |  ||||| || ||||| |||||  |||| |||||||||||||||||| |||||||| | || || || ||||||||       ||  |    ||  ||    || ||  |||||    ||||| |     |||  ||  ||  | ||||    | ||| | | ||||| || | |                 
GGGAATGAATGACAGGGGAGTTTCTTATACATTCGGCCCTGACAAAGTGACAGAGTTTCTTGAGAAGCATGATCTGGACCTTGTTTGTCGTGCTCATCAGgtatcaaacttgattgtcagtagttgtttatttcatacctatattataagcagttgagttcat--atcatctactctactacttgtaggattgtagagaata----------------

upper sequence: GRMZM2G017982_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S283_48V6.1 (Physcomitrella patens), 5'ss of exon 3
--------------------TTTCATTCACATTTGGTCCTGATAAAGTTTCAGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGGTTGTTGTGTTCTTAAAGATgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattgcttgattgatctccag
                    |||| |||||||||||||| || | |||  |||| |||||  | |||||||| ||||| |||||||||||||| ||||| ||   |||| ||   ||      |  ||  |||  | |   ||||| | |  || || | |  |     |||| ||  |  |  ||    ||  |      |  | || 
GGGAAACAATGACCGAGGAGTTTCCTTCACATTTGGTCCAGAAACAGTCGCAGAGTTTCTACAAAAGCATGACTTGGATCTTATCTGCCGAGCCCATCAAgt-actgtgatc---aactctcaatttaagtatagctt---aaacttcgagttg-attattcatgaggatatgtttaggagtgtttatttttaatccgaaaaagttca-