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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTTCGACATTTCTGACCCCAATGTTGTTGGACAGAATGATTTACTGATTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctagctatgattaatagttctgacatatttactcggctcctcaatcaccttaacattgagaatcatgaccccgaacagcttactcaaccaatga...

Basic information

species Zea mays
transcript GRMZM2G017853_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74233405|gb|DT641319.1|DT641319
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|91051136|gb|EB161554.1|EB161554
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|91871463|gb|EB401433.1|EB401433
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|71437097|gb|DR818147.1|DR818147
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|76927174|gb|DV171165.1|DV171165
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|78082079|gb|DV510491.1|DV510491
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|71310883|gb|DR791744.1|DR791744
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|148975423|gb|EE025724.2|EE025724
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|78085442|gb|DV513835.1|DV513835
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|50336042|gb|CO531168.1|CO531168
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|101382998|gb|EB813552.1|EB813552
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|78089274|gb|DV517648.1|DV517648
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|71764490|gb|DR962427.1|DR962427
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
EST: gi|89251154|gb|DY622940.1|DY622940
EST:     TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAG                         GAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC
genomic: TTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctag ... catcctatagGAGCATCCAAGTTGCAAAGTTTATGGCCAGACCGCAAGCAAAAATCATCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGTTCGACATTTCTGACCCCAATGTTGTTGGACAGAATGATTTACTGATTGTGGGCCCTGGTGTTCTTGGGCGAATCATAGCTGAGAAGTGGAAAAAGgtattcctagctatgattaatagttctgacatatttactcggctcctcaatcaccttaacattgagaatcatgaccccgaacagcttactcaaccaatga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA