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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGGGCTTCCCCGAGAAGCGCATCGGCTATCTAGGACTCATGCTTCTGCTCGACGAGCGGCAGGAGGTCCTCATGCTCGTCACCAACTCTCTCAAGCAgtatccgccctgtctgcgcttaccagttgtatctgttgatgctgttatgcgttatttctgatttccagagtattggttattacttaacgtgggcag

Basic information

species Zea mays
transcript GRMZM2G017421_T01
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017421_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g07090.2 (Oryza sativa), 5'ss of exon 2
CGGCGGGCTTCCCCGAGAAGCGCATCGGCTATCTAGGACTCATGCTTCTGCTCGACGAGCGGCAGGAGGTCCTCATGCTCGTCACCAACTCTCTCAAGCAgtatccgccctgtctgcgcttaccagttgtatctgt--tgatgctgttatgcgttatttctgatttccagagtattggttattacttaacgtgggcag
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CCGCGGGCTTCCCCGAGAAGCGCATCGGGTACCTCGGCCTCATGCTGCTGCTCGACGAGCGGCAGGAGGTGCTCATGCTCGTCACCAACTCGCTCAAGCAgtatccacccatactatacttatgctccatatctgttttgatttttcttagaatgctatgttctgctttgagcatttggtagtacttaacgcggacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211302059|gb|FL223404.1|FL223404
EST:     CTCGACGAGCGGCAGGAGGTCCTCATGCTCGTCACCAACTCTCTCAAGCA                         AGATCTTAACCACTCAAACCAGTTCATTGTTGGGGCTTGCGCTCTGTGCCC
genomic: CTCGACGAGCGGCAGGAGGTCCTCATGCTCGTCACCAACTCTCTCAAGCAgtatccgccc ... acgtgggcagAGATCTTAACCACTCAAACCAGTTCATTGTTGGG-CTTGCGCTCTGTGCCC