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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCGCTGCAGGAGGCGATGGAGTTCATGCGAAGGGTGGAGTCGCAGCTGAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTGgtactgaagttgctgcggcccatgcccctcttattttatattagatgatttcttggatcggttgtcgcctcatgcagcgatgcatgccctccctcttgtt...

Basic information

species Zea mays
transcript GRMZM2G017087_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017087_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g51690.3 (Oryza sativa), 5'ss of exon 2
AGGCCGCTGCAGGAGGCGATGGAGTTCATGCGAAGGGTGGAGTCGCAGCTGAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTGgtactgaagttgctgcggcccatgcccctcttattttatattagatgatttcttggatcggttgtcgcctcatgcag-cgatgca-tgccctccctcttgtt
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AGGCCGCTGCAGGAGGCCATGGAGTTCTTGAGGAGGGTGGAGACGCAGCTCAACACGCTCTCCATCTCCGGCAGATCGCTTCGCAATATCCTTTCCTCCGgtaacacaac-acatccatccatccttccatcttcttctatcc-atgtactaatccattgcatgtcatcttcttcgatcgatctgctggtttatatcacggt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86469581|gb|DY235951.1|DY235951
EST:     GCGCAACATCCTTTCATTTG                         GCTCTTTTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
genomic: GCGCAACATCCTTTCATCTGgtactgaagt ... atgcttgaagGCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
EST: gi|211385201|gb|FK954733.1|FK954733
EST:     GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTG                         GCTCTTCTGAGGAGGATCAAGAAGGTWGCGGAGGAGAGACCGAGCTCCCTG
genomic: GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTGgtactgaagt ... atgcttgaagGCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
EST: gi|22542334|gb|BU092787.1|BU092787
EST:     GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTG                         GCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
genomic: GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTGgtactgaagt ... atgcttgaagGCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
EST: gi|211382575|gb|FK954728.1|FK954728
EST:     GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTG                         GCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
genomic: GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTGgtactgaagt ... atgcttgaagGCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
EST: gi|74236767|gb|DT644681.1|DT644681
EST:     TCCTTTCATCTG                         GCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
genomic: TCCTTTCATCTGgtactgaagt ... atgcttgaagGCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
EST: gi|21987869|gb|BQ779397.1|BQ779397
EST:     GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTG                         GCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
genomic: GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTGgtactgaagt ... atgcttgaagGCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
EST: gi|76019795|gb|DT946965.1|DT946965
EST:     GAACTCGCTTTCCATTTCCGGAAGGTCGGTGGGCAACATCCTTTCATCTG                         GCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
genomic: GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTGgtactgaagt ... atgcttgaagGCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
EST: gi|211385208|gb|FK954740.1|FK954740
EST:     GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTG                         GCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
genomic: GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTGgtactgaagt ... atgcttgaagGCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
EST: gi|60357235|gb|DN224208.1|DN224208
EST:     GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTG                         GCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG
genomic: GAACTCGCTTTCCATCTCCGGAAGGTCGCTGCGCAACATCCTTTCATCTGgtactgaagt ... atgcttgaagGCTCTTCTGAGGAGGATCAAGAAGGTAGCGGAGGAGAGACCGAGCTCCCTG