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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTAGCCAGCCTCCGATTGTTTTCAAGACTCAGTTGTACACACTAACTGGTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactattttgttagtgcttatagattcatttgtccattgggcatgcatacattgtaataactggatgacgtgtttgctgtgcaataatacag

Basic information

species Zea mays
transcript GRMZM2G017086_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017086_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 5'ss of exon 2
CACTAGCCAGCCTCCGATTGTTTTCAAGACTCAGTTGTACACACTAACTGGTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactattttgttagtgcttatagattcatttgtccattgggcatgcatacattg---------taataactggatgacgtgtttgctgtgca-ataatacag
||| |||||||| ||  |||| || ||||| ||| | ||||| || |||||||| ||||||||| | |||||||||||||||||||| ||||||||||||||||   ||  |    |||||||| ||  ||  ||    |   | |    || |||          |  ||||    ||     ||| ||||     |||| |||
CACCAGCCAGCCGCCTGTTGTCTTTAAGACCCAGCTATACACTCTGACTGGTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatgctcac-gtgcttatggacacaactgattttcatgtacttctatatttaatctttctttgtaacaacgtggtcaattttctgtatttgtaatgcag

upper sequence: GRMZM2G017086_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G20900.1 (Glycine max), 5'ss of exon 2
CACTAGCCAGCCTCCGATTGTTTTCAAGACTCAGTTGTACACACTAACTGGTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaa----actattttgttagtgcttatagattcatttgtccattgggcatgcatacattgtaataactggatgacgtgtttgctgtgcaataatacag--
||||| |||| || |   |||||| ||    || |||||     | ||||||||||| |||||| | |||||||||||||| ||||| ||  | ||||||||||    | | ||    |  |  |   |||   |      | | |   |  ||| | || |   |  ||  |    | |||  |    |||||| |||  
CACTACCCAGTCTGCTTATGTTTTTAAATGCCAATTGTATGATTTGACTGGTGTGCCTCCTGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTGAAGgtaagtagattgttgaagtgatattgtaagaaataaccaaacttagcctaaccatgctttatccaatttgattttgatatttcattattaataat-cagtg

upper sequence: GRMZM2G017086_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT3G21280.1 (Arabidopsis thaliana), 5'ss of exon 2
CACTAGCCAGCCTCCGATTGTTTTCAAGACTCAGTTGTACACACTAACTGGTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaa---------actattttgtta-gtgcttatagattcatttgtccattgggc-atgcatacattg-taataactggatgacgtgtttgctgtgcaataatacag
 ||||||||||||||  ||||||||||| ||||||||||     | | ||| || || ||||| || ||||| || ||||| || || ||  | ||||||||||         |||    || |  ||| || ||| || | |  |   ||   | ||   |   ||| | || | |  | ||   |||| || |  | |    |||
TACTAGCCAGCCTCCTTTTGTTTTCAAGGCTCAGTTGTATGATTTGAGTGGAGTTCCGCCTGAGCGGCAAAAGATCATGGTCAAAGGTGGCCTTTTGAAGgtaatttggattcacttgcctgctgcgtgtttgtagttttactgctgtgttcctctatttgtttgttgatgatgattt-acgataggttt-cttttaattttcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211522096|gb|FL426854.1|FL426854
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211512097|gb|FL429023.1|FL429023
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211493528|gb|FL393023.1|FL393023
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGA
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGA
EST: gi|211043164|gb|FL426037.1|FL426037
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211020022|gb|FL404266.1|FL404266
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211140278|gb|FL369584.1|FL369584
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211542655|gb|FL412583.1|FL412583
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|241994792|gb|GR421145.1|GR421145
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211144966|gb|FL424885.1|FL424885
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|78121540|gb|DV539924.1|DV539924
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211168209|gb|FL421347.1|FL421347
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211449542|gb|FL376102.1|FL376102
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211504148|gb|FL387155.1|FL387155
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211408393|gb|FL407128.1|FL407128
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211066798|gb|FL430461.1|FL430461
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211133807|gb|FL389465.1|FL389465
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCMGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211513751|gb|FL391725.1|FL391725
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211321831|gb|FL416221.1|FL416221
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211059996|gb|FL387688.1|FL387688
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211455945|gb|FL376150.1|FL376150
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211099805|gb|FL386855.1|FL386855
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211008625|gb|FL395313.1|FL395313
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211106564|gb|FL394472.1|FL394472
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|32935100|gb|CF039912.1|CF039912
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211037648|gb|FL421296.1|FL421296
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211219147|gb|FL370888.1|FL370888
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211141642|gb|FL394943.1|FL394943
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211085323|gb|FL409653.1|FL409653
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211254374|gb|FL402662.1|FL402662
EST:     GTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAAATTATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTTGAAAGAT
genomic: GTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAA-T-ATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGT-GAAAGAT
EST: gi|74240015|gb|DT647929.1|DT647929
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211431557|gb|FL401073.1|FL401073
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211141962|gb|FL418179.1|FL418179
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|13237239|gb|BG355253.1|BG355253
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|67017287|gb|CO446036.1|CO446036
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211536230|gb|FL396283.1|FL396283
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211527639|gb|FL412989.1|FL412989
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|33094903|gb|CF054897.1|CF054897
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211335073|gb|FL428116.1|FL428116
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|31998167|gb|CD661962.1|CD661962
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211459123|gb|FL410721.1|FL410721
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211379399|gb|FL389227.1|FL389227
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211076695|gb|FL396856.1|FL396856
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211036892|gb|FL381576.1|FL381576
EST:     TGTGCCACCTGNAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: TGTGCCACCTG-AACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211121494|gb|FL373631.1|FL373631
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|50332356|gb|CO527482.1|CO527482
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: gi|211521051|gb|FL387963.1|FL387963
EST:     GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAG                         GACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactatt ... aataatacagGACGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACTAGCCAGCCTCCGATTGTTTTCAAGACTCAGTTGTACACACTAACTGGTGTGCCACCTGAACGCCAAAAAATTATGGTGAAGGGAGGAATATTGAAGgtaaactattttgttagtgcttatagattcatttgtccattgggcatgcatacattgtaataactggatgacgtgtttgctgtgcaataatacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG