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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATCATTATATCTTGTCATGTCAACTGATCTTTTCTCCGACCGCGTCAAGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatatattttattatgatacatcagcatttctttattctttatatgatgcacttaaatttcatctttgagttaacatagctgtgtcctggatgtattgcttgatag

Basic information

species Zea mays
transcript GRMZM2G016184_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G016184_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g46410.1 (Oryza sativa), 5'ss of exon 4
TGTATCATTATATCTTGTCATGTCAACTGATCTTTTCTCCGACCGCGTCAAGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactga-tatattttattatgatacatcagcatttctttattctttatatgatgcacttaaatttcatctttgagttaacatagctgtgtcctggatgtattgcttgatag
| |||||||||||||||||||||| || ||||||||||| || ||| | ||||| ||||| ||||||||  |||| || || ||||| | ||| || |||||||||| ||   || |||||  ||||      ||| | |    ||| |||| || | ||   ||  ||  || |  | |||||  |||||||||| |||||    ||| ||
TATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCACTTTTGCATTAGGGgtactgaataacattcattatc-tacagtgaactttttct----tttttatgctggaattgttttaaattgtttaactgacatatttgtgtcctggctgtatg--ctgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60355201|gb|DN222174.1|DN222174
EST:     AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG                         GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT