Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatccctttttatccaaaaggcttatttgtagcaaaacttgttcaacaatccaattattgttatgcaatacctattgtcaaattcttttaggggc...

Basic information

species Zea mays
transcript GRMZM2G016106_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g45240.4 (Oryza sativa), 5'ss of exon 2
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatccctttttatccaaaaggcttatttgtagcaaaa-cttgttcaacaatccaattattgttatgcaatacctattgtcaaattcttttaggggc
| ||||| ||  | || ||||||||||| ||||| ||||| ||||| || || || || ||||| || |||||||| || |||||||||||||||||||||   |    |||  |   |         |      ||| | |  |  ||  || | |  |   | | |  || |  ||   | |  |    |||   | 
ATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACGTCCTCTCAAAAGCTTTTTCACGGTTCCCCTCCTTCAACATGGCAAGGgtatggaaaagtttcgacatactctctacttccactccaagatcaaggacattaagctagctgggggttttgaaaatttacc-tgaggtagccttaactgt

upper sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 3
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaat--atccctttttatccaaaaggcttatttgtagcaaaacttgttcaacaatccaattattgttatgcaatacctattgt-caaattcttttaggggc
| || || ||||| |||||||| ||||| || ||||| || |||||||||||||| || |||||||| ||||||||||| ||||| ||| ||||| | |||| |  || |||  |    |   ||   | ||| |    |    || |      | | | | |    ||    ||  |  ||| || ||| || |  |   
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGAgtaagtggattcctcatctaactcgagttctctttatgtttagttatgattgttg-tgctagtgtgagcattttttatttcctgttcagatttttgtttga--

upper sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA10G30900.2 (Glycine max), 5'ss of exon 3
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaata---tccctttttatccaaaaggcttatttgt--agcaaaacttgttcaacaatccaattattgttatgcaatacctattgtcaaattcttttaggggc
| || || ||||| |||||||| ||||| || ||||| || |||||||||||||| || |||||||| ||||| ||||| ||||| ||||||||| | |||| |    || | | | |  | ||     ||| |||  ||  |   ||||    | |     | |   || |  | | ||| ||  || ||| || |  |   
ATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGAgtaagtgggttctcatctaactcgaattctctatatgtttagttatgattgtcgtgctagt--gtgagcattttttatttcctgtt--cagatttttgtttgaa-

upper sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT3G04500.1 (Arabidopsis thaliana), 5'ss of exon 3
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaa----atatccctttttatccaaaaggcttatttgtagcaaaacttgttcaacaatccaattattgttatgcaatacctattgtcaaattcttttaggggc
| ||||| || ||||||||||| ||||| || |||||||| |||||||||||||| |||||||||||  |  | || ||  ||||||| ||||| | |||||     |||  || |    |     |||||  | ||    |  | | |        | |   |    |||   | | |  | ||||  |  || |||    
ATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATGTTCTTTCCAAAGCATTTGCTAGATTCCCCACCTTCAATATGGCCAAGgtaactgtgtatatctctcctccttttcggctt--tagtgattattcatatctggtttcctatgaacatatatttgagaacattagtcatgtgattgtagtc--

upper sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv09s0018g01710.t01 (Vitis vinifera), 5'ss of exon 3
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatccctttttatccaaa---aggcttatttgtagcaaaacttgttcaacaatccaattattgttatgcaatacctattgtcaaattcttttaggggc---
| || || ||  | || ||||| ||||| ||||| || || || ||||||||||| || |||||||| ||||| ||||| |||||||| ||||| || |||| | |   |||   || |     |  ||| ||| ||  |  |    |  || |    |  ||||||| |||      ||||||    || ||  |    |   
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGAgtaagtttatatttccctcaagttttatacttttttttattaggaac--tctaata--ttagatattgtt-tgcttggtgtattgttgt-tttttgcatatcctct

upper sequence: GRMZM2G016106_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv14s0036g00630.t01 (Vitis vinifera), 5'ss of exon 3
ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatccctttttatccaaaaggcttatttgtagcaaaacttgttcaacaatccaattatt-gttatgcaatacctattgtcaaattcttttaggggc------
| || || ||  | || ||||| ||||| ||||| || || |||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| |  |||| | | |  ||| || |||     |||  | |       |||  | |  ||| | |||||| | |||    | | |  ||     |    ||   | |      
ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAgtaagt-ttctatttcattcaagttctttacctttt------ctttattaggaattctattattagatatcatttgcttggtgcatggtgagctttttgcccattct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76284046|gb|DV023614.1|DV023614
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|50322655|gb|CO517781.1|CO517781
EST:     GTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: GTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|148955971|gb|EC901692.2|EC901692
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|50322967|gb|CO518093.1|CO518093
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|71299286|gb|DR785657.1|DR785657
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|67016497|gb|CO445246.1|CO445246
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|71307240|gb|DR789787.1|DR789787
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|78087828|gb|DV516221.1|DV516221
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|149076368|gb|EE164986.2|EE164986
EST:     TGTTCTATCCAAAGCATTCTCACGGTTTCCATCCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: TGTTCTATCCAAAGCATTCTCACGGTTTCCATCC-TTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|33100465|gb|CF060425.1|CF060425
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|50322656|gb|CO517782.1|CO517782
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|149070600|gb|EE159005.2|EE159005
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|21891603|gb|BQ744816.1|BQ744816
EST:     ATGTTCTATCCAAAGCATTCTCACGGNTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGA
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGA
EST: gi|71307238|gb|DR789786.1|DR789786
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|78081954|gb|DV510366.1|DV510366
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|31355235|gb|CD439592.1|CD439592
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|71434198|gb|DR815248.1|DR815248
EST:     ATGTTCTATTCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|76021667|gb|DT948837.1|DT948837
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|149070599|gb|EE159004.2|EE159004
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|78025573|gb|DV493960.1|DV493960
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|148962986|gb|EE013934.2|EE013934
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|67022274|gb|CO451023.1|CO451023
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|148954322|gb|EC899733.2|EC899733
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|91051021|gb|EB161439.1|EB161439
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|60397535|gb|DN230351.1|DN230351
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|60353708|gb|DN220681.1|DN220681
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|60354882|gb|DN221855.1|DN221855
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|211288995|gb|FL439217.1|FL439217
EST:     TCTATCCAAAGCATTCTCACGG-TTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: TCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|50325268|gb|CO520394.1|CO520394
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|148928375|gb|EE285065.2|EE285065
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|71435061|gb|DR816111.1|DR816111
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|76021666|gb|DT948836.1|DT948836
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|76284045|gb|DV023613.1|DV023613
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|148930497|gb|EE285066.2|EE285066
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|71420217|gb|DR805043.1|DR805043
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|16921229|gb|BM075048.1|BM075048
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|148954321|gb|EC899732.2|EC899732
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|78114283|gb|DV532672.1|DV532672
EST:     ATGTTCTATCCCAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|5555288|gb|AI881239.1|AI881239
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGC
EST: gi|71299288|gb|DR785658.1|DR785658
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|4967150|gb|AI691865.1|AI691865
EST:     ACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|93015051|gb|EB640571.1|EB640571
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|71763302|gb|DR961239.1|DR961239
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|78087827|gb|DV516220.1|DV516220
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|71449013|gb|DR830063.1|DR830063
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|5124136|gb|AI745760.1|AI745760
EST:     ATGTTCTATCCAAAGCTTTCTCNCGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|71435062|gb|DR816112.1|DR816112
EST:     TGTTCTATCCAAAGCATTCTCACGGTTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGAATGGCAAG
genomic: TGTTCTATCCAAAGCATTCTCACGGTTT-CCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAG
EST: gi|148982967|gb|EE028858.2|EE028858
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
EST: gi|60397750|gb|DN230566.1|DN230566
EST:     ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG                         GTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC
genomic: ATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 225

ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 117

ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 117

ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 139

ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGGgtaaatatcc ... tttatttcagGTTGTTAGAGATAAGAGGACTGGCAAGACTAAAGGTTATGGATTTGTGAGCTTTTCAAACCCTACTGACTTGGCTGCAGCAATAAAAGAGATGAATG