Sequence
atgc intronic sequence ATGC exonic sequenceTCAGTGTTAGTGAGGTTGAGGCTCTATTCGAGCTGTTCAAGAGCATAAGTGGTTCAGTGATTGACGATGGCCTGATCAACAAGgtatattctattagtcatctctgtattccttgctatattgtcagttttgtgtatgaacatcaaatatgctcactagccatgttgtagttagccctcattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G015324_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g41510.1 (Oryza sativa), 5'ss of exon 2
TCAGTGTTAGTGAGGTTGAGGCTCTATTCGAGCTGTTCAAGAGCATAAGTGGTTCAGTGATTGACGATGGCCTGATCAACAAGgtatat-tctattagtcatctctgtattccttgctatattgtcagttttgtgtatg-aacatcaaatatgctcactagccatgttgtagttagccctcattg-
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TTAGCGTAAGTGAGGTGGAGGCTTTGTTCGAGCTGTTCAAGAGCATTAGTGGTTCTGTGATCGACGATGGGCTCATCAATAAGgtgaacatctaactgtttcttgggggtatctcaccatattggcatcatggcatgtgtgattatgagcatcctgata---catttactaatctgcttttatagc
upper sequence: GRMZM2G015324_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT4G17615.1 (Arabidopsis thaliana), 5'ss of exon 3
TCAGTGTTAGTGAGGTTGAGGCTCTATTCGAGCTGTTCAAGAGCATAAGTGGTTCAGTGATTGACGATGGCCTGATCAACAAGgtata--------ttctattagtcatctctgtattccttgctatattgtcagttttgtgtatgaacatcaaatatgctcactagccatgttgtagttagccctcattg
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TTAGTGTGAGTGAGGTTGAAGCATTATTTGAGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACAAGgtacaaagtttgtttcttttgacccaatttggatctttt--catgaccccatcgttgtatctttttgttctttacgctattcatctacagtatttttcaact------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9953024|gb|BE639607.1|BE639607EST: GATTGACGATGGCCTGATCAACAAG GAAGAATTCCAGATAGCATTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
genomic: GATTGACGATGGCCTGATCAACAAGgtatattcta ... tattacacagGAAGAATTCCAGTTAGCATTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAGTGTTAGTGAGGTTGAGGCTCTATTCGAGCTGTTCAAGAGCATAAGTGGTTCAGTGATTGACGATGGCCTGATCAACAAGgtatattctattagtcatctctgtattccttgctatattgtcagttttgtgtatgaacatcaaatatgctcactagccatgttgtagttagccctcattg
- - - - - - - - - - - - - - - - - - - AGAGCA