Sequence
atgc intronic sequence ATGC exonic sequenceGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATCGACAAGAAAAAgtcagttccgaaccatttcaagattatttcaattgcatttcttgacttttatggtttttcctgacattgcaatttttttccctgtacttctgaaagtagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G014975_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g09240.1 (Oryza sativa), 5'ss of exon 4
GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATCGACAAGAAAAAgtcagttccgaaccatt------tcaagattatttcaattgcatttcttgacttttatggtttttcc---tgacattgcaatttttttccctgtacttctgaaagtagt
||||||||||||||||| |||||||||||||| || ||||| ||||| || |||||||||| ||||||| | |||| || || | ||| | || || | | ||||| | | | ||| | || || | | || |||
GTCATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATTGACAAAAAGAAgtcagttctcaaccattttacttttaagaataaatctagtgccact-ttatctctatttgttttggcaagttatgttgacacttcattttttatgctgctg--------
upper sequence: GRMZM2G014975_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S249_49V6.2 (Physcomitrella patens), 5'ss of exon 3
-----------------------------------------------GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATCGACAAGAAAAAgt---cagttccgaaccatttcaagattatttcaa--ttgcatttcttgacttttatggtttttcctgacattgcaatttttttccctgtacttctgaaagtagt------------------------------------------------------------
|| ||||| ||||| ||||| | |||||||||| ||||||| ||||||||||||| |||| | ||| | | | | || || ||| | || ||| || | |||| | |||| || | | | |
AAGCTGAGGCAGCAAGGATCCGTGACAAGTATCCTGACAGAATTCCTGTAATTGTGGAGAAAGCCGAAAAGAGTGACATCTCAGACATAGACAAGAAAAAgtatgtagtttgtgttctttttgtaacgagcttgacattattttcctttcatattttggggttgagtctgattggtttcgttttgtttggggcctaaataattttagttcgtgcgcactgaattgtggcacgttctttgaattgatatgaggaacgcctgtgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211478882|gb|FL381849.1|FL381849EST: ATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATCGACAAGAAAAA GTACCTTGTCCCCGCCGACCTCACAGTGGGACAGTTTGTGTACGTGGTGCG
genomic: ATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATCGACAAGAAAAAgtcagttccg ... ttgcatgcagGTACCTTGTCCCCGCCGACCTCACAGTGGGACAGTTTGTGTACGTGGTGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATCGACAAGAAAAAgtcagttccgaaccatttcaagattatttcaattgcatttcttgacttttatggtttttcctgacattgcaatttttttccctgtacttctgaaagtagt
- - - - - - - - - GAGAGG
- - - - - - - - - AGAGGA
- - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - AAGAAA