Sequence
atgc intronic sequence ATGC exonic sequenceGAAATTAAGTTTGAGCCAAATGTGATGTGCGAACATATTGACAAGAAACTTACTTTCCGTTCTAGTCAGgtttgcgaaatttctctttttagatacacatgtttcttagttattcggtcaacaaaggaatttgtttatttttttggatttgttttcttatgctttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 20
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 20
GAAATTAAGTTTGAGCCAAATGTGATGTGCGAACATATTGACAAGAAACTTACTTTCCGTTCTAGTCAGgtttgcgaaatttc----tctttttagatacacatgtttcttagttattcggtcaacaaaggaat---ttgtttatttttttggat------ttgtt--ttcttatgctttag
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GAAATTAAGTTTGAGCCAAATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAGgtttgaaagaaatcgtcacctttttagatgcaaacttttttagttttctagctcaagattgtgatggcttctctaaattgtcccatgctccattgttctttctaatgctgcag
upper sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 20
lower sequence: GLYMA13G16040.1 (Glycine max), 5'ss of exon 1
GAAATTAAGTTTGAGCCAAATGTGATGTGCGAACATATTGACAAGAAACTTACTTTCCGTTCTAGTCAGgtttgcgaaatttctctttttagatacacatgtttcttagttattcggtcaacaaaggaatttgtttatttttttggatttgttttcttatgctttag-------
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GAAATTAAGTTTGAACCAAATGTCATGTGTGAACCTATTGACAAGAAAGTAACATTTCGAACAAGCCAGgtgagttatatccataatt---gatgcacatttttttcag--attttgaaaataaatattcctggggatcttggtaatggtattacttggaataatgattgcaat
upper sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 20
lower sequence: GLYMA20G11330.1 (Glycine max), 5'ss of exon 12
GAAATTAAGTTTGAGCCAAATGTGATGTGCGAACATATTGACAAGAAACTTACTTTCCGTTCTAGTCAGgtttgcgaaatttctctttttagatacacatgtttcttagttattcggtcaacaaaggaatttgtttatttttttggatttgttttcttatgctttag------------
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GAAATTAAGTTTGAACCAAATGTCATGTGTGAACCTATTGACAAGAAAGTAACATTTCGAACAAGCCAGgtgagttatatccataatt---gatgcacaatttt-------gttcagattttaaaaatattcctggggatcttgggaatgatattactgggaataatgattgcaatgtt
upper sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 20
lower sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 20
GAAATTAAGTTTGAGCCAAATGTGATGTGCGAACATATTGACAAGAAACTTACTTTCCGTTCTAGTCAGgtttgcgaaatttctctttttagatacacatgtttcttagttattcggtcaacaaaggaatttgtttatttttttggatttgttttcttatgctt-tag
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GAAATTAAGTTTGAGCCAAATGTTATGTGTGAACCTATTGATAAGAAAGTAACATTTCGAGCAAGCCAGgtaaattataaacaccatt---gatgcac-----tttaagttactgcatct---------tttgttggtttatt--gatttgtttttctaaatttgcag
upper sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 20
lower sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 20
GAAATTAAGTTTGAGCCAAATGTGATGTGCGAACATATTGACAAGAAACTTACTTTCCGTTCTAGTCAGgtttgcgaaatttctctttttagatacacatgtttcttagttattcggtcaacaaaggaatttgtttatttttttggatttgttttcttatgctt-tag
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GAAATTAAGTTTGAGCCAAATGTTATGTGTGAACCCATTGATAAGAAACTAACATTTCGAGCAAGCCAGgtaaattataaacaccatt---gatgcac-----tttgagttactgtatc----------tttgtttggtttattg-atctgtttttctatatttgcag
upper sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 20
lower sequence: EFJ18164 (Selaginella moellendorffii), 5'ss of exon 17
GAAATTAAGTTTGAGCCAAATGTGATGTGCGAACATATTGACAAGAAACTTACTTTCCGTTCTAGTCAGgtttgcg-aaatttctctttttagatacacatgtttcttagttattcggtcaacaaaggaatttgtttatttttttggatttgttttcttatgctttag
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GAAATTAAATTTGACCCGAATGTGATGTGCGAACCAATTGACAAGAAACTTACGTTTCGAGACAGTCAGgtacgggtagaactatttttatatttgaccctgattgtacgtttctcag--------------------------------------------------
upper sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 20
lower sequence: EFJ13603 (Selaginella moellendorffii), 5'ss of exon 17
-------------------------------GAAATTAAGTTTGAGCCAAATGTGATGTGCGAACATATTGACAAGAAACTTACTTTCCGTTCTAGTCAGgtttgcgaaatttctc---tttttagatacacatgtttcttagttattcggtcaacaaaggaatttgtttatttttttggatttgttttcttatgctttag
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CGCGGCAAACACTGAGGTTCAAATATTTGAAGAAATAAAGTTTGAACCAAATGTGATGTGCGAACCCGTGGACAAAAAACTTACTTTCAAGGCGAGTCAGgtaggctgtgtttgttagtttcctagtcactaattcacttccgttcttca--cag----------------------------------------------
upper sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 20
lower sequence: EFJ14291 (Selaginella moellendorffii), 5'ss of exon 17
GAAATTAAGTTTGAGCCAAATGTGATGTGCGAACATATTGACAAGAAACTTACTTTCCGTTCTAGTCAGgtttgcgaaatttctctttttagatacacatgtttcttagttattcggtcaacaaaggaatttgtttatttttttggatttgttttcttatgctttag
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GAAATTAAATTTGACCCGAATGTGATGTGCGAACCAATTGACAAGAAACTTACGTTTCGAGACAGTCAGgtacg-ggtagaactatttttatatttg-accccgattgtacgtttgctcag----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|166492121|gb|EG171425.1|EG171425EST: GACAAGAAACTTACTTTCCGTTCTAGTCAG CTTGTAAGTATGGAGACATCATCTGTTTCCAAAAGGCTCCTGTTCCAGATG
genomic: GACAAGAAACTTACTTTCCGTTCTAGTCAGgtttgcgaaa ... tatgctttagCTTG-AAG-ATGGAGACATCATCTGTTTCCAAAAGGCTCCTGTTCCAGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAATTAAGTTTGAGCCAAATGTGATGTGCGAACATATTGACAAGAAACTTACTTTCCGTTCTAGTCAGgtttgcgaaatttctctttttagatacacatgtttcttagttattcggtcaacaaaggaatttgtttatttttttggatttgttttcttatgctttag
- - - - - - - - - - - - - - - - - - - - - AAGAAA