1 5' 3' | 2 5' 3' | 3 5' 3' |
GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtgactgaataaaaaaacatagtctttccgttggaacgacggcggcagaagctctgctgatgctgctgtagtttctgttcgtcagtacacgcaacgcaagtagtacgtttttcacatgttcgttttgcag
species | Zea mays |
transcript | GRMZM2G014695_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211487163|gb|FL024035.1|FL024035
genomic: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211492924|gb|FL024053.1|FL024053
genomic: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: AAAGGAAACACTTCGCTTCAGCTCGTTGACAGACGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|32922594|gb|CF027406.1|CF027406
genomic: AAA-GAAACACTTCGCTTCAGCTGGTTGAC--A-GACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: AAAGGAAACACTTCGCTTCAGCTCGTTGACAGACGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211492932|gb|FL024061.1|FL024061
genomic: AAA-GAAACACTTCGCTTCAGCTGGTTGAC--A-GACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: AAAGGAAACACTTCGCTTCAGCTCGTTGACAGACGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211487162|gb|FL024034.1|FL024034
genomic: AAA-GAAACACTTCGCTTCAGCTGGTTGAC--A-GACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: AAAGGAAACACTTCGCTTCAGCTCGTTGACAGACGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211490037|gb|FL024040.1|FL024040
genomic: AAA-GAAACACTTCGCTTCAGCTGGTTGAC--A-GACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211490043|gb|FL024046.1|FL024046
genomic: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211492930|gb|FL024059.1|FL024059
genomic: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211490039|gb|FL024042.1|FL024042
genomic: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: AAAGGAAACACTTCGCTTCAGCTCGTTGACAGACGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|71431596|gb|DR812646.1|DR812646
genomic: AAA-GAAACACTTCGCTTCAGCTGGTTGAC--A-GACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|37420070|gb|CF647721.1|CF647721
genomic: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|149105340|gb|EE290837.2|EE290837
genomic: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211495812|gb|FL024068.1|FL024068
genomic: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211492927|gb|FL024056.1|FL024056
genomic: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: AAAGGAAACACTTCGCTTCAGCTCGTTGACAGACGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
genomic: AAA-GAAACACTTCGCTTCAGCTGGTTGAC--A-GACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtgactgaataaaaaaacatagtctttccgttggaacgacggcggcagaagctctgctgatgctgctgtagtttctgttcgtcagtacacgcaacgcaagtagtacgtttttcacatgttcgttttgcag
- AAAGAA
- AAGAAA
- - - - - - - - - TCAGCT
- - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - AGAGCA