1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtgactgaataaaaaaacatagtctttccgttggaacgacggcggcagaagctctgctgatgctgctgtagtttctgttcgtcagtacacgcaacgcaagtagtacgtttttcacatgttcgttttgcag
species | Zea mays |
transcript | GRMZM2G014695_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAAGGAAACACTTCGCTTCAGCTCGTTGACAGACGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211492932|gb|FL024061.1|FL024061
genomic: AAA-GAAACACTTCGCTTCAGCTGGTTGAC--A-GACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: AAAGGAAACACTTCGCTTCAGCTCGTTGACAGACGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCCEST: gi|211490037|gb|FL024040.1|FL024040
genomic: AAA-GAAACACTTCGCTTCAGCTGGTTGAC--A-GACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
EST: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAA ATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
genomic: GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtga ... cgttttgcagATGGGTATACTGGTGATTACGGTGGACCTAGACTGCTGTCGCTGCAGAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAGAAACACTTCGCTTCAGCTGGTTGACAGACGACTCAGAGCAAAgtaagggtgactgaataaaaaaacatagtctttccgttggaacgacggcggcagaagctctgctgatgctgctgtagtttctgttcgtcagtacacgcaacgcaagtagtacgtttttcacatgttcgttttgcag
- AAAGAA
- AAGAAA
- - - - - - - - - TCAGCT
- - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - AGAGCA