1 5' 3' | 2 5' 3' | 3 5' 3' |
GAAGATGCTCGTGCCGCTTACGGCGTCCCTCTACGTTCCCGGTTCACTGGACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggcttgttgtagttgttttatacatgactgatatattagctagaaaacttatctagattgtaatgtggatttcaaccactaaagtttcttatt...
species | Zea mays |
transcript | GRMZM2G014676_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTEST: gi|211271655|gb|FL410591.1|FL410591
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGT
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTEST: gi|211376470|gb|FL385359.1|FL385359
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACT
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|5439377|gb|AI820298.1|AI820298
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211201879|gb|FL397393.1|FL397393
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211192668|gb|FL425759.1|FL425759
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|37387036|gb|CF630710.1|CF630710
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|4572862|gb|AI586511.1|AI586511
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|113679307|gb|DW836829.1|DW836829
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTAEST: gi|211520823|gb|FL376991.1|FL376991
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTA
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|87156107|gb|DY400896.1|DY400896
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211450012|gb|FL396735.1|FL396735
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|60346501|gb|DN213474.1|DN213474
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211251912|gb|FL397015.1|FL397015
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211536511|gb|FL409034.1|FL409034
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211173979|gb|FL462219.1|FL462219
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: GCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211332538|gb|FL409859.1|FL409859
genomic: GCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|67012485|gb|CO441234.1|CO441234
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211211636|gb|FL368407.1|FL368407
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211250184|gb|FL420128.1|FL420128
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211207034|gb|FL397426.1|FL397426
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATYTATTGEST: gi|211212734|gb|FL416182.1|FL416182
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAAEST: gi|211135788|gb|FL400333.1|FL400333
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAA
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGG-AAAGAATACTEST: gi|211290380|gb|FL395532.1|FL395532
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACT
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGEST: gi|211309649|gb|FL419256.1|FL419256
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|113704279|gb|EE681783.1|EE681783
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|148933216|gb|EC876868.2|EC876868
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211426758|gb|FL418443.1|FL418443
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|4834976|gb|AI670202.1|AI670202
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|166672017|gb|EG297621.1|EG297621
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: CGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211282155|gb|FL373322.1|FL373322
genomic: CGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|26560008|gb|CA832243.1|CA832243
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211206826|gb|FL384239.1|FL384239
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGAAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|60395987|gb|DN228857.1|DN228857
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211475869|gb|FL467334.1|FL467334
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|60398107|gb|DN230923.1|DN230923
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211502510|gb|FL422026.1|FL422026
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|211202327|gb|FL412255.1|FL412255
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTGEST: gi|17930646|gb|BM267606.1|BM267606
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
EST: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAG AAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
genomic: ACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggc ... tgctgcgcagAAAACCATGGCTCAGGGGAAAGAATACTGTGAAAGGAAAATTAATTTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGATGCTCGTGCCGCTTACGGCGTCCCTCTACGTTCCCGGTTCACTGGACGACGCGGAGAAGGTCCTCGTCGATGTCGGCACCGGTTACTTCATCGAGgtaacctggcttgttgtagttgttttatacatgactgatatattagctagaaaacttatctagattgtaatgtggatttcaaccactaaagtttcttatt
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