ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcaccaagtccagttaagaaaggatcaaggaaacgattaagcttaccatgtgcagtaacatgaatgccacgatgagtgtgatgatgcttagttattatgatttcaaacactgaatggactattccacatgacttctccagtgtatatcgtgtttacggtatctagtgactgtag

Basic information

species	Zea mays
transcript	GRMZM2G014313_T02
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G014313_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g32220.1 (Oryza sativa), 5'ss of exon 2

GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcaccaagtccagttaagaaaggatcaaggaaacgattaagcttaccatgtgcagtaacatgaatgccacgatgagtgtgatgatgcttagttattatgatttcaaacactgaatggactattccacatgacttctccagtgtatatcgtgtttacggtatctagtgactgtag
||| ||||| || ||||||||||||||||||| |||  | |||| ||||||||||||||| |||||  ||||||||||||||||||| |||||||||||||| |  |     |          |     ||   | ||||  |    |      || | |   ||     || || |  |   | | |  | | |||                                                                            
GCAAGTGGTAATTAGGGCGAGGAACCTGAGGATCAATTCGCAGTACATCCCGGCCAAGGCCTTCAAATCACGCAAGGTTTATTACACTAACGAGgtaattcaacttgaagcatctgagtgtactgtcccaattaagtaaggat-ttgtaaaggctagcctttttgtagttattagag--actgtacatcatcagtat----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211497847|gb|FL218030.1|FL218030

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211291996|gb|FL370573.1|FL370573

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211067136|gb|FL218067.1|FL218067

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGGTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211064386|gb|FL218050.1|FL218050

EST:     CATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACNACCA-CGAG                         GGAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGC
genomic: CATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTAC-ACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGC

EST: gi|211067130|gb|FL218061.1|FL218061

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211092572|gb|FL395896.1|FL395896

EST:     CATCCCGGNCAAGGCTTTNCA-GGCACGCAAGTTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCANGCA
genomic: CATCCCGGCCAAGGCTTT-CAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211159436|gb|FL370487.1|FL370487

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAAACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211497851|gb|FL218034.1|FL218034

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAATGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|15053265|gb|BI358810.1|BI358810

EST:     CATCCNCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: CATCC-CGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211069863|gb|FL218071.1|FL218071

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211497852|gb|FL218035.1|FL218035

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211434427|gb|FL412915.1|FL412915

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211067128|gb|FL218059.1|FL218059

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|60401153|gb|DN233960.1|DN233960

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211073353|gb|FL368259.1|FL368259

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAAGACGCGC
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAA-GACGCGC

EST: gi|71443118|gb|DR824168.1|DR824168

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211064381|gb|FL218045.1|FL218045

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|78121870|gb|DV540254.1|DV540254

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211109231|gb|FL386007.1|FL386007

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|31356975|gb|CD441332.1|CD441332

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211498980|gb|FL377920.1|FL377920

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211291993|gb|FL370570.1|FL370570

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211497849|gb|FL218032.1|FL218032

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAG
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAG

EST: gi|211497850|gb|FL218033.1|FL218033

EST:     TCATCCCGGNCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGGTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|50337385|gb|CO532511.1|CO532511

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211069870|gb|FL218078.1|FL218078

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211099802|gb|FL386852.1|FL386852

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211067129|gb|FL218060.1|FL218060

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|71443117|gb|DR824167.1|DR824167

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCCAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211064377|gb|FL218041.1|FL218041

EST:     CATCCCGGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCNACGAG                         GAAAATCGGATTACTTCATGTTCCAAAGGGAAGACGCGCAGAAGGCTCAGG
genomic: CATCCCGG-CCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAAT-GGATTACTTCATGTTCCAAAGG-AAGACGCGCAGAAGGCTCAGG

EST: gi|211069861|gb|FL218069.1|FL218069

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211011084|gb|FL375749.1|FL375749

EST:     TCATCCCGGCCAAGACTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAACATGGATTACTTCATGTTCCAAAGGAAGACGCGCACAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|32936209|gb|CF041021.1|CF041021

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|94477440|gb|EB706398.1|EB706398

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211011987|gb|FL416045.1|FL416045

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|71446698|gb|DR827748.1|DR827748

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|91055764|gb|EB166182.1|EB166182

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211069871|gb|FL218079.1|FL218079

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211064382|gb|FL218046.1|FL218046

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211269406|gb|FL418839.1|FL418839

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|15545720|gb|BI643514.1|BI643514

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211067131|gb|FL218062.1|FL218062

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211482792|gb|FL423815.1|FL423815

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211064376|gb|FL218040.1|FL218040

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211533497|gb|FL409016.1|FL409016

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211064385|gb|FL218049.1|FL218049

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|148954192|gb|EC899598.2|EC899598

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|31356132|gb|CD440489.1|CD440489

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211064387|gb|FL218051.1|FL218051

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|32851266|gb|CD990947.1|CD990947

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|15590500|gb|BI675116.1|BI675116

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211266592|gb|FL404013.1|FL404013

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|14202406|gb|BG836083.1|BG836083

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|67020108|gb|CO448857.1|CO448857

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211064384|gb|FL218048.1|FL218048

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAA

EST: gi|211497854|gb|FL218037.1|FL218037

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|31356090|gb|CD440447.1|CD440447

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|78090530|gb|DV518904.1|DV518904

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211421551|gb|FL418421.1|FL418421

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|71324327|gb|DR798865.1|DR798865

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|32864290|gb|CF003972.1|CF003972

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211407987|gb|FL375638.1|FL375638

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211426228|gb|FL393460.1|FL393460

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCAT
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCAT

EST: gi|211069866|gb|FL218074.1|FL218074

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCA

EST: gi|211497848|gb|FL218031.1|FL218031

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGC
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGG-ATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGC

EST: gi|8367730|gb|BE050675.1|BE050675

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211069864|gb|FL218072.1|FL218072

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211064383|gb|FL218047.1|FL218047

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|31356942|gb|CD441299.1|CD441299

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211067125|gb|FL218056.1|FL218056

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211067137|gb|FL218068.1|FL218068

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAA

EST: gi|32937025|gb|CF041844.1|CF041844

EST:     TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

EST: gi|211518357|gb|FL388530.1|FL388530

EST:     TCATCCCGGTCAAGGGTTTCAAGGCACGCAAGGTTTATTACACCAACGAG                         GAAAATGGATTACTTCATGGTCCAAAGGAAGACGCGCATAAGGCTCAGGCA
genomic: TCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 246

GCAGGTGGTCATCAGGGCGAGGAACCTGAGGACCAACGCACAGTTCATCCCGGCCAAGGCTTTCAAGGCACGCAAGGTTTATTACACCAACGAGgtaattcacc ... gtgactgtagGAAAATGGATTACTTCATGTTCCAAAGGAAGACGCGCAGAAGGCTCAGGCAGCCATGTTTTCTGATCCAAACATGGCCATGGACATGATGAAGAAGAACC

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 239

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 279