Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAGGAGTCTGGATCCAACACCAAATTCTACTACTCCTTCAACGCCGGTGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAGgtaacaatttatcgctagtactgtttcatcattatatacacttgaatatgataagcaatgtagtggtactgtcactcgaaccctgtagagcccattttctttagagctgacgaagtagcattttgctatatgtgcattgtctgcag

Basic information

species Zea mays
transcript GRMZM2G014193_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014193_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g17784.1 (Oryza sativa), 5'ss of exon 2
TCCAAGGAGTCTGGATCCAACACCAAATTCTACTACTCCTTCAACGCCGGTGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAGgtaa-caatttatcgctagtactgtt--------tcatcattatatacacttgaatatgata--agcaatgt--------agtggtactgtcac-tcgaacc-ctgtagagcccattttctttagagctgac-gaagtagcattttgctatatgt-gcattgtctgcag
||| |||||||||| || |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||||| | ||    | ||| |  | ||        |||  || |   |    | | || |||   || | |||        ||| | |  ||||  ||   ||  |  |  |  |||    | |   | |||  |  ||  ||||||  |   | |  ||||||  | ||
TCCGAGGAGTCTGGCTCTAACACCAAGTTCTACTACTCGTTCAATGCCGGGGGCATCCATTTCATCATGCTCGGTGCCTACGTCGACTACAACCGGACAGgtaatccatcagccactattcatcttgatggcactcaatatcaggaatgtatcattaagattttagaattgttcacattaagttgcatagtcatgtcaggccatttcattgttcatacattctcttgttgattgtggtgacattttcgtgcttattacattgtgcgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32799857|gb|CD952093.1|CD952093
EST:     TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAG                         GAGTTCAGAACTCGTGGTTAGAAAAGGATTTGCAGAGGGTTGATCGACGAG
genomic: TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAGgtaacaattt ... ttgtctgcagGAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAG
EST: gi|78093471|gb|DV521845.1|DV521845
EST:     TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAG                         GAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAG
genomic: TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAGgtaacaattt ... ttgtctgcagGAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAG
EST: gi|32799587|gb|CD951823.1|CD951823
EST:     TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAG                         GAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAG
genomic: TGGCATCCATTTTATCATGCTCGGTGCCTACATCGACTACAACCGCACAGgtaacaattt ... ttgtctgcagGAGTTCAGTACTCGTGGTTGGAAAAGGATTTGCAGAGGGTTGATCGACGAG