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ATGCCAGGTACAATAATGGCAATGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAGgtaatgctcccctggtctcttgctgtattattactaattctaaaatgtgctgttcttcaacagaatgtttggctagcttgagtaagcaaaagacatttgt...
species | Zea mays |
transcript | GRMZM2G014069_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAG CCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAGEST: gi|74234929|gb|DT642843.1|DT642843
genomic: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAGgtaatgctcc ... tttgatgcagCCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAG
EST: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAG CCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAGEST: gi|211402498|gb|FL360101.1|FL360101
genomic: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAGgtaatgctcc ... tttgatgcagCCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAG
EST: GGACGGCTTAATCCGAC-TAGTATCATGATATATTGTGGGAACTATTA-G CCTGGTCACTTTCAGGGCAATTCCTAEST: gi|211106145|gb|FL352585.1|FL352585
genomic: GGACGGCTTAATC-GACCTAGTATCATGATATATGGTGG-AACTATTAAGgtaatgctcc ... tttgatgcagCCTGGTCACTTTCAGGGCAATTCCTA
EST: GGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGGACTATTTAAG CCTGGTCACTTTCAGGCCAATTCCTACGAATATAGTTTEST: gi|149112950|gb|EE295739.2|EE295739
genomic: GGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATT-AAGgtaatgctcc ... tttgatgcagCCTGGTCACTTTCAGGGCAATTCCTACGA-TATAGTTT
EST: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAG CCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTTCAGTGCEST: gi|78088301|gb|DV516694.1|DV516694
genomic: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAGgtaatgctcc ... tttgatgcagCCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAGTGC
EST: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAG CCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAGEST: gi|149110704|gb|EE190563.2|EE190563
genomic: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAGgtaatgctcc ... tttgatgcagCCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAG
EST: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAG CCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAGEST: gi|28568894|gb|CB280769.1|CB280769
genomic: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAGgtaatgctcc ... tttgatgcagCCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAG
EST: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAG CCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAGEST: gi|88757602|gb|DY541743.1|DY541743
genomic: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAGgtaatgctcc ... tttgatgcagCCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAG
EST: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATAAAG CCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTEST: gi|71311153|gb|DR791883.1|DR791883
genomic: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAGgtaatgctcc ... tttgatgcagCCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTT
EST: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAG CCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCTAG
genomic: TGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAGgtaatgctcc ... tttgatgcagCCTGGTCACTTTCAGGGCAATTCCTACGATATAGTTTCTGCTTTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCCAGGTACAATAATGGCAATGGGACGGCTTAATCGACCTAGTATCATGATATATGGTGGAACTATTAAGgtaatgctcccctggtctcttgctgtattattactaattctaaaatgtgctgttcttcaacagaatgtttggctagcttgagtaagcaaaagacatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaaa