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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGCTTCTTTTAATCCTGTCTCTGAATATGTGGATGAGCAAGCCAGAGCTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATAgtacgttctctttcgttccccatcattttcttttaagaatatacagtgtttcttggaggatggtaagactgaagattgagatgaaataacatccttacatgttattcag

Basic information

species Zea mays
transcript GRMZM2G013625_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013625_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g47262.2 (Oryza sativa), 5'ss of exon 3
CAATGCTTCTTTTAATCCTGTCTCTGAATATGTGGATGAGCAAGCCAGAGCTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATAgtacgttctctttcgttccccatcattttcttttaagaatatacagtgtttcttggaggatggtaagactgaagattgagatgaaataacatcctta--catgttattcag
||||| ||||||||  |  |   |||||||||  ||||||||| | ||| |||||||||| ||||||||||||||    ||||||||||||||||| ||||||||||||  |||  |   ||||  ||| | |  |   | |    |||  ||  || ||       |||| || || ||||||||||||    |||  |||||| |||||
CAATGTTTCTTTTAGCCAGGATCCTGAATATGCTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACATGCAGATAgtacgttctgcttccattatcatccctttgtctcga---tttgtgatgtcactacgaaga------aactggagtttaagatgaaataactgttttatgcatgttcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91053085|gb|EB163503.1|EB163503
EST:     CTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATA                         TCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC
genomic: CTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATAgtacgttctc ... tgttattcagTCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC
EST: gi|78115431|gb|DV533819.1|DV533819
EST:     CTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATA                         TCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC
genomic: CTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATAgtacgttctc ... tgttattcagTCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC
EST: gi|71767635|gb|DR965572.1|DR965572
EST:     CTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATA                         TCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC
genomic: CTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATAgtacgttctc ... tgttattcagTCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC