Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGCTTCTTTTAATCCTGTCTCTGAATATGTGGATGAGCAAGCCAGAGCTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATAgtacgttctctttcgttccccatcattttcttttaagaatatacagtgtttcttggaggatggtaagactgaagattgagatgaaataacatccttacatgttattcag

Basic information

species Zea mays
transcript GRMZM2G013625_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013625_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g47262.2 (Oryza sativa), 5'ss of exon 3
CAATGCTTCTTTTAATCCTGTCTCTGAATATGTGGATGAGCAAGCCAGAGCTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATAgtacgttctctttcgttccccatcattttcttttaagaatatacagtgtttcttggaggatggtaagactgaagattgagatgaaataacatcctta--catgttattcag
||||| ||||||||  |  |   |||||||||  ||||||||| | ||| |||||||||| ||||||||||||||    ||||||||||||||||| ||||||||||||  |||  |   ||||  ||| | |  |   | |    |||  ||  || ||       |||| || || ||||||||||||    |||  |||||| |||||
CAATGTTTCTTTTAGCCAGGATCCTGAATATGCTGATGAGCAATCAAGATCTTCAGTGGGGCAGTCTTCAGCATCTGTCAATTTGCATGACATGCAGATAgtacgttctgcttccattatcatccctttgtctcga---tttgtgatgtcactacgaaga------aactggagtttaagatgaaataactgttttatgcatgttcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28985740|gb|CB350792.1|CB350792
EST:     CTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATA                         TCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC
genomic: CTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATAgtacgttctc ... tgttattcagTCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC
EST: gi|18174779|gb|BM350167.1|BM350167
EST:     CTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATA                         TCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC
genomic: CTTCAGTGGGACAGTCTTCAGCATCAAGTAATTTGCATGACATGCAAATAgtacgttctc ... tgttattcagTCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC
EST: gi|18164149|gb|BM333988.1|BM333988
EST:     CTTCAGCATCAAGTAATTTGCATGACATGCAAATA                         TCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC
genomic: CTTCAGCATCAAGTAATTTGCATGACATGCAAATAgtacgttctc ... tgttattcagTCAGTGAGATTGACAGCCGAATTCATGGAGCTTGCAAAGGAGAATACAAGC