Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33097204|gb|CF057164.1|CF057164EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST:
gi|32804380|gb|CD956616.1|CD956616EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST:
gi|32804660|gb|CD956896.1|CD956896EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST:
gi|213170721|gb|FM187986.1|FM187986EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST:
gi|32827253|gb|CD966931.1|CD966931EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST:
gi|32804985|gb|CD957221.1|CD957221EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGTAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
EST:
gi|32804794|gb|CD957030.1|CD957030EST: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAAC ATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
genomic: GCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaag ... ctgtattcagATCACGCCTTGGCTGCCAAGTGATCGCGAAGCCTGAGCTTGATGGCATGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGTAAAATATTATAACAAGTTAGAAGATCCAGCAGATGAAGAAAACGATATGCTTGACCTTGCATTTGGGCTCACAGAAACgtaagtcaagatcctttgaacagagtaactcttattatactgtctcctgaattttgctatctctgtataacggagacagacatttcaattttgagtattt
- - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAA