1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTTCGTAGGGAGCAGGATCAGCTGACGCGATGTTCCCCAGGATTTCCCGGCTCGGGGCGCGGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTGgttggtatctttactttcctcttagttcatttccctctatgattggtggcctactcgttattggcttattgctcatcagctgtggtgaaattttgctaac...
species | Zea mays |
transcript | GRMZM2G013607_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCGGCTCGGGGCGCGGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTG GAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGCEST: gi|60340656|gb|DN207629.1|DN207629
genomic: CCGGCTCGGGGCGCGGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTGgttggtatct ... tatctggcagGAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGC
EST: GGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTG GAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGCEST: gi|32943773|gb|CF048592.1|CF048592
genomic: GGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTGgttggtatct ... tatctggcagGAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGC
EST: CCGGCTCGGGGCGCGGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTG GAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGC
genomic: CCGGCTCGGGGCGCGGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTGgttggtatct ... tatctggcagGAAACTTGCTAAACAGTCAACGCATTTTCTTTCAAGATCATGTTAACCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCGTAGGGAGCAGGATCAGCTGACGCGATGTTCCCCAGGATTTCCCGGCTCGGGGCGCGGCTCCTGCGCGAGTCTAGAGCCGAGACAAGAGCTGgttggtatctttactttcctcttagttcatttccctctatgattggtggcctactcgttattggcttattgctcatcagctgtggtgaaattttgctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT