1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacacattactattgttttatacttttattcaacttttatgcttcataggaagagtttatatgaccaatacaatcaatgtacttctgttgaacag
species | Zea mays |
transcript | GRMZM2G013600_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTCEST: gi|211132182|gb|FL066419.1|FL066419
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTCEST: gi|211133098|gb|FL066420.1|FL066420
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTCEST: gi|211131249|gb|FL066401.1|FL066401
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTCEST: gi|60400710|gb|DN233517.1|DN233517
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: GACATGGGCTATGAGGATGAGCCTCCAGAACCTGAGATTGAG GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTCEST: gi|211133102|gb|FL066424.1|FL066424
genomic: GACATGGGCTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacacattactattgttttatacttttattcaacttttatgcttcataggaagagtttatatgaccaatacaatcaatgtacttctgttgaacag
- - GAGGAT
- - AGGATG