Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacacattactattgttttatacttttattcaacttttatgcttcataggaagagtttatatgaccaatacaatcaatgtacttctgttgaacag

Basic information

species Zea mays
transcript GRMZM2G013600_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013600_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g38960.1 (Oryza sativa), 5'ss of exon 2
CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacacattactattgttttatacttttattcaacttttatgcttcataggaagagtttatatgac-caatacaatcaatgtacttctgttgaacag
 |||||||||||||| |||||||||||||||||||| ||  |||||| ||||  |  |  | |  | ||     || |||         ||||  | ||      |  | |||| |  |                
GTATGAGGATGAGCCACCAGAACCTGAGATTGAGgtaca--cacattgctatcctcatgcagtgatgttatctgttaatg------gaaaagaactgatggagttctgttcaataatag----------------

upper sequence: GRMZM2G013600_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g38960.2 (Oryza sativa), 5'ss of exon 1
------------------------------------------------------------------CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacacattactattgttttatacttttattcaacttttatgcttcataggaagagtttatatgac-caatacaatcaatgtacttctgttgaacag
                                                                   |||||||||||||| |||||||||||||||||||| ||  |||||| ||||  |  |  | |  | ||     || |||         ||||  | ||      |  | |||| |  |                
ATGTCATTTTAAAGGATTGTTTTGTTGGATATTGATTTTGGAATGGCATTGTATTTTCCTCTGCAGGTATGAGGATGAGCCACCAGAACCTGAGATTGAGgtaca--cacattgctatcctcatgcagtgatgttatctgttaatg------gaaaagaactgatggagttctgttcaataatag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211199640|gb|FL066446.1|FL066446
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211199633|gb|FL066439.1|FL066439
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211199631|gb|FL066437.1|FL066437
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211133103|gb|FL066425.1|FL066425
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211202196|gb|FL066454.1|FL066454
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211204764|gb|FL066465.1|FL066465
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|149071159|gb|EE159556.2|EE159556
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211133109|gb|FL066431.1|FL066431
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211199637|gb|FL066443.1|FL066443
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|148979713|gb|EE026786.2|EE026786
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|15426720|gb|BI542542.1|BI542542
EST:     CTATGAGGATGAGCCTCCGAGAACCTNGAGATTGAG                         GAAGGGGCCGNAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATG
genomic: CTATGAGGATGAGCCTCC-AGAACCT-GAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCG-AAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATG
EST: gi|15426730|gb|BI542552.1|BI542552
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|78107711|gb|DV526129.1|DV526129
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211132168|gb|FL066405.1|FL066405
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|60397946|gb|DN230762.1|DN230762
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211132182|gb|FL066419.1|FL066419
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|60399144|gb|DN231958.1|DN231958
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|32908904|gb|CF013717.1|CF013717
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGACGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211133098|gb|FL066420.1|FL066420
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|78107710|gb|DV526128.1|DV526128
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211202197|gb|FL066455.1|FL066455
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|71764952|gb|DR962889.1|DR962889
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|6636953|gb|AW261225.1|AW261225
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCCTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211132176|gb|FL066413.1|FL066413
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAMGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211133100|gb|FL066422.1|FL066422
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAC                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211202193|gb|FL066451.1|FL066451
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211199630|gb|FL066436.1|FL066436
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211131245|gb|FL066397.1|FL066397
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211133104|gb|FL066426.1|FL066426
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|60352879|gb|DN219852.1|DN219852
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211204765|gb|FL066466.1|FL066466
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211202206|gb|FL066464.1|FL066464
EST:     CTATGAGGATGATCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|60357727|gb|DN224700.1|DN224700
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|93017559|gb|EB643079.1|EB643079
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211502196|gb|FK951723.1|FK951723
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|60396800|gb|DN229628.1|DN229628
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|149102013|gb|EE287504.2|EE287504
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211131249|gb|FL066401.1|FL066401
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|74235059|gb|DT642973.1|DT642973
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|84977260|gb|DW475682.1|DW475682
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211199639|gb|FL066445.1|FL066445
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|149086215|gb|EE175755.2|EE175755
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211502195|gb|FK951722.1|FK951722
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211202192|gb|FL066450.1|FL066450
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211199641|gb|FL066447.1|FL066447
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211199629|gb|FL066435.1|FL066435
EST:     CTATCAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|32855906|gb|CD995587.1|CD995587
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACTTTTTAGATGCCCCTGATGACGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211133102|gb|FL066424.1|FL066424
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|15426767|gb|BI542589.1|BI542589
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211132177|gb|FL066414.1|FL066414
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211132173|gb|FL066410.1|FL066410
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGSSCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211132170|gb|FL066407.1|FL066407
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211377054|gb|FK951720.1|FK951720
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|149071158|gb|EE159555.2|EE159555
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|37426097|gb|CF650799.1|CF650799
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211199634|gb|FL066440.1|FL066440
EST:     CTATCAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|71764951|gb|DR962888.1|DR962888
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
EST: gi|211377055|gb|FK951721.1|FK951721
EST:     CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG                         GAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC
genomic: CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 640

CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTCATAGGTGGAGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 433

CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTCATAGGTGGAGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 399

CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTCATAGGTGGAGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 289

CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacac ... tgttgaacagGAAGGGGCCGAAGAAGAGCTTGAGAACAACGAAGATGCCCCTGATGATGTCATAGGTGGAGAGGGTGAAGATAAGGAACAGGAAAAGACCAAGCGTGAGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGgtgcagacacattactattgttttatacttttattcaacttttatgcttcataggaagagtttatatgaccaatacaatcaatgtacttctgttgaacag

- - GAGGAT
- -  AGGATG