1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGGTGCCTGAACCTTTTGTTCCTCTTACTGATGAGGATGAAGAAATGGTTCGTCGGGCTCTTCATGGCAAGAACAGgtttgctttttatcttcttttgttatgtgatagtcacacaaatgcctacataactagtggtatctaaaagtgtcctttatgcag
species | Zea mays |
transcript | GRMZM2G012601_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCATGGCAAGAACAG TCGTGAGAGGTTAGCAGTACATGAACCTTCAAATATTGTGATAACAAGGGAEST: gi|21432227|gb|BQ547717.1|BQ547717
genomic: TTCATGGCAAGAACAGgtttgctttt ... ctttatgcagTCGTGAGAGGTTAGCAGTACATGAACCTTCAAATATTGTGATAACAAGGGA
EST: ACTGATGAGGATGAAGAAATGGTTCGTCGGGCTCTTCATGGCAAGAACAG TCGTGAGAGGTTAGCAGTACATGAACCTTCAAATATTGTGATAACAAGGGA
genomic: ACTGATGAGGATGAAGAAATGGTTCGTCGGGCTCTTCATGGCAAGAACAGgtttgctttt ... ctttatgcagTCGTGAGAGGTTAGCAGTACATGAACCTTCAAATATTGTGATAACAAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGTGCCTGAACCTTTTGTTCCTCTTACTGATGAGGATGAAGAAATGGTTCGTCGGGCTCTTCATGGCAAGAACAGgtttgctttttatcttcttttgttatgtgatagtcacacaaatgcctacataactagtggtatctaaaagtgtcctttatgcag
- - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC