Sequence
atgc intronic sequence ATGC exonic sequenceTATCATTTAGGAAGGGGTCATATAGGTGCATCTATGAAAGCAAAACTTTACCATCTCTTGGAACAAAGATCAGCTTCATGgtatgtttcttcaacttttactggttgcagagtttgcagtaccatgattgtgaattttgtaatctaattttgtttgtcttttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G011777_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g20860.2 (Oryza sativa), 5'ss of exon 2
TATCATTTAGGAAGGGGTCATATAGGTGCATCTATGAAAGCAAAACTTTACCATCTCTTGGAACAAAGATCAGCTTCATGgtatgtttct-tcaacttttactg-gttgcagagtttgcagtaccatgattgtgaattttgtaatctaattttgtttgtcttttag
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TACCACTTGGGGAGAGGTCATATAGGTGCATCTATGAGTGCAAAGCTTTACCATCTTATGGAGCAAAGATCAGCTACATGgtatttctttgttgatttgaattatgttgtagtgttatgatttttctgtttgt---ctcaccaatttcatttcattttgtttgtag
upper sequence: GRMZM2G011777_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G12960.1 (Glycine max), 5'ss of exon 2
TATCATTTAGGAAGGGGTCATATAGGTGCATCTATGAAAGCAAAACTTTACCATCTCTTGGAACAAAGATCAGCTTCATGgtatgtttcttcaacttttactggttgca-gagtttgcagtaccatgattgtgaattttgtaatctaattttgtttgtcttttag
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TATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATCACTTGCTGGAGCATAGAGCTTCAGAATGgtattcatttttatcaat-attgatactatgaatttgtgctattctagatttccagttctcagcattctttctttatccttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211073815|gb|FL047510.1|FL047510EST: TCTATGAAAGCAAAACTTTACCATCTCTTGGAACAAAGATCAGCTTCATG CCGTCACTTTGTTATTCCGTTGTGGAAGGGAAGTGGATACACTACTATGTT
genomic: TCTATGAAAGCAAAACTTTACCATCTCTTGGAACAAAGATCAGCTTCATGgtatgtttct ... tgtcttttagCCGTCACTTTGTTATTCCGTTGTGGAAGGGAAGTGGATACACTACTATGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATCATTTAGGAAGGGGTCATATAGGTGCATCTATGAAAGCAAAACTTTACCATCTCTTGGAACAAAGATCAGCTTCATGgtatgtttcttcaacttttactggttgcagagtttgcagtaccatgattgtgaattttgtaatctaattttgtttgtcttttag
- - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT