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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTAGCTCCATTGTTTTTGTACTTCATCCAATGGCTGGACTGCGACTGCTGTTATGCTCTTCCCAGCTATTTAGGACTATTCACATTCTCATATGCAAGgtaaaattgcagtatgtggttctgaaatttggacctcttatatatattttttctatacaggagacctaggtttcatgcattaaaatctgttatgttttgtttgcgcag

Basic information

species Zea mays
transcript GRMZM2G011562_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011562_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g17400.2 (Oryza sativa), 5'ss of exon 2
CCCTAGCTCCATTGTTTTTGTACTTCATCCAATGGCTGGACTGCGACTGCTGTTATGCTCTTCCCAGCTATTTAGGACTATT-CACATTCTCATATGCAAGgtaaaattgcagtatgtggttctgaaatttggacctcttatatatattttttctatacaggagacctaggtttcatgcattaaaatctgttatgttttgtttgcgcag
  || || ||||| ||| | ||| ||||||| |||||||| || | ||||||||||||||||||||| ||| |||| || || ||||||||||| |||||||||  | || ||||||    | || |  || |  |    |  |||  ||  |       | |    | || ||  |    |   || | |   | |     ||  || 
-ACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCAGTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGgtaccactgaagtatggatgtatgtatctttgtacaagaaagtatggttgctt------gcatttatgggcttgttcagctgtcatttttgtggctgcagctgt-ca-