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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGATGCTTGGGTTGGATGCAGCTGGGAAAACCACCATACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgtaccacctatctgcttgtgcatttcataacttttggtttcaaccattgctaattacagttgtccaactctgcacctgccatgcaattgattcgtccgttcatatgtttagtgacagcatgcactttatcacattgtag

Basic information

species Zea mays
transcript GRMZM2G011518_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011518_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g42940.1 (Oryza sativa), 5'ss of exon 2
GTGGTGATGCTTGGGTTGGATGCAGCTGGGAAAACCACCATACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattg-taccacctatctgcttgtgcatttcat--aacttttggtttcaaccattgctaattacagttgtccaactctgcacctgccatgcaattgattcgtccgttcatatgtttagtgacagcatgcactttatcacattgtag
||||||||||||||| | ||||| || ||||| |||||||||||||||||||| ||||| || |||||||||||||| ||||| || ||||||  | |   |  || |  ||      | |   ||||  ||  |||  |||        || || | ||     |||||    || |  |      ||    || | |                                          
GTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGgtaggttcactctcatccctccctccctccgcctcatcgaatcttttattttgttttgagccaaatccaa--acccaacctaacatcatcatcatcatca--tcatgcag----------------------------------------

upper sequence: GRMZM2G011518_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G09790.3 (Glycine max), 5'ss of exon 1
---------GTGGTGATGCTTGGGTTGGATGCAGCTGGGAAAACCACCATACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgtaccacctatctgcttgtgcatttcataacttttggtttcaaccattgctaattacagttgtccaactctgcacctgccatgcaattgattcgtccgttcatatgtttagtgacagcatgcactttatcacattgtag
         || |||||||||||  | ||||| ||||| ||||| || ||||| || ||||| |||||||| |||||| | || ||||| ||||| |||||| || ||                     ||   ||||  | |   || || |  |  | |||  |  |   ||  | |   | ||  ||  |  | |||   || ||  | ||||  ||  |   | |                  
TGGGTTTAGGTTGTGATGCTTGGTCTAGATGCTGCTGGCAAAACAACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGgtgcgttt--------------------tatactataaactcttaatttaatc--taattattcta--taagcagattt---cttggtata-agctaattaagccatttctgtgtt-ggtagccaaagg------------------

upper sequence: GRMZM2G011518_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G09790.2 (Glycine max), 5'ss of exon 2
GTGGTGATGCTTGGGTTGGATGCAGCTGGGAAAACCACCATACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgtaccacctatctgcttgtgcatttcataacttttggtttcaaccattgctaattacagttgtccaactctgcacctgccatgcaattgattcgtccgttcatatgtttagtgacagcatgcactttatcacattgtag
|| |||||||||||  | ||||| ||||| ||||| || ||||| || ||||| |||||||| |||||| | || ||||| ||||| |||||| || ||                     ||   ||||  | |   || || |  |  | |||  |  |   ||  | |   | ||  ||  |  | |||   || ||  | ||||  ||  |   | |                  
GTTGTGATGCTTGGTCTAGATGCTGCTGGCAAAACAACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGgtgcgttt--------------------tatactataaactcttaatttaatc--taattattcta--taagcagattt---cttggtata-agctaattaagccatttctgtgtt-ggtagccaaagg------------------

upper sequence: GRMZM2G011518_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G02110.1 (Glycine max), 5'ss of exon 2
GTGGTGATGCTTGGGTTGGATGCAGCTGGGAAAACCACCATACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgtaccacctatctgcttgtgcatttcataacttttggtttcaaccattgctaattacagttgtccaactctgcacctgccatgcaattgattcgtccgttcatatgtttagtgacagcatgcactttatcacattgtag
|| |||||||||||  | ||||| ||||| ||||| || ||||| || ||||| |||||||| |||||| | || ||||| ||||| |||||| || ||          |||    | ||||    |||  ||| |||  |       |||    ||| | ||    |  | | | || |   ||   |||  || ||    ||    |  |                          
GTTGTGATGCTTGGTCTAGATGCTGCTGGCAAAACAACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACAATAGgtgcgtttaat-------tctataagcgcatcatttaa--tttagttata-------ctataagcagatttc----ttggtatcagctaattaagccatt--tctgtcttgatagccaaagg-------------------------

upper sequence: GRMZM2G011518_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G01380.2 (Glycine max), 5'ss of exon 3
GTGGTGATGCTTGGGTTGGATGCAGCTGGGAAAACCACCATACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgtaccacctatctgcttgtgcatttcataacttttggtttcaaccattgctaattacagttgtccaactctgcacctgccatgcaattgattcgtccgttcatatgtttagtgacagcatgcactttatcacattgtag
|| |||||||||||  | ||||| ||||| ||||| || ||||| || |||||||||||||| |||||| | |||||||| ||||| || |||  | |  ||     | | |  |     |  || | | ||     | |||  ||   |||  | | |||| || || |  || |  ||| ||  |||     |   |                                       
GTTGTGATGCTTGGTCTTGATGCTGCTGGCAAAACAACTATACTTTACAAGCTTCACATTGGAGAAGTTTTATCCACTGTTCCTACAATTGgtg-ggtcttattttttttttatt-----aagtcttcatttaaaagtgcaaa-atccttaaacatatttgttcatctttcaactt--cattcatgtgacaacacgaatt--------------------------------------

upper sequence: GRMZM2G011518_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv16s0039g02240.t01 (Vitis vinifera), 5'ss of exon 2
GTGGTGATGCTTGGGTTGGATGCAGCTGGGAAAACCACCATACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgtaccacctatctgcttgtgcatttcataacttttg-gtttcaaccattgctaattacagttgtccaactctgcacctgccatgcaattgattcgtccgttcatatgtttagtgacagcatgcactttatcacattgtag
|| |||||||||||  ||||||||||||| ||||| |||||||| || ||  | |||||||| |||||| | |||||||| || || || ||| || ||   |        || || | |      | | ||||| ||||||      |||||| | | || |    || | |  |   |  |      ||    |    ||||| ||                               
GTTGTGATGCTTGGCCTGGATGCAGCTGGTAAAACAACCATACTGTACAAATTGCACATTGGAGAAGTTTTGTCCACTGTTCCCACAATTGgtacg-ttaggctgt-----tgttttttc--cctgtgatttttgtgtttca------gctaataa-atttat---gcttttcctccatctagtggccaatataactagccatatcttc------------------------------

upper sequence: GRMZM2G011518_T03 (Zea mays), 5'ss of exon 2
lower sequence: PP1S91_59V6.1 (Physcomitrella patens), 5'ss of exon 2
GTGGTGATGCTTGGGTTGGATGCAGCTGGGAAAACCACCATACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgtaccacctatctgcttgtgcatttcataacttttggtttcaac-------cattgctaattacag---------ttgtccaactctgcacct----gccatgcaattgattcgtccgttcatatgtttagtgacagcat--gcactttatcacattgtag-----------------
|| ||||||||||| || |||||||| || ||||||||||| |||||||||||||||||||| ||  |||| ||||| || || ||||| |||    |   ||     |  |||    |   || || | | |    |  |         | || ||| ||  ||         || || |    || || |     || |   ||||    |  |||| ||  ||    ||     ||  ||| ||  |||| |  |                   
GTTGTGATGCTTGGTTTAGATGCAGCAGGCAAAACCACCATCCTCTATAAGCTTCACATTGGAGAGATTCTGTCCACCGTTCCCACCATTGgtaaagtgacacatgacacttgccgcaggtcttgatgattctcaaatggagtgtctcgtcgttcctagttgaaggtagttgtgttatctattgatgaacttttgcaccttaatattgtgctgagcgttgatgagtcggctggttatattggcatttgttcacttcctgtgttcccgcatctctcag

upper sequence: GRMZM2G011518_T03 (Zea mays), 5'ss of exon 2
lower sequence: PP1S37_304V6.1 (Physcomitrella patens), 5'ss of exon 2
GTGGTGATGCTTGGGTTGGATGCAGCTGGGAAAACCACCATACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgt-----------ccgattgta---------ccacctatctgcttgtgcatttcataacttttggtttca------accattgctaattacagttgtccaactctgca-cctgcca------tgcaattgattcgtccgttcatatgtttagtgacagcatgcactttatcacattgtag-
|||||||||||||| ||||| || || || ||||||||||| ||||||||||| || ||||| ||  || | ||||| ||||| ||||| |||            |  |||||          ||  | | || | ||||   || |   || ||  |  |      ||  ||| |   |||| |  | ||||  |    |||||||      ||  | || ||     | | | || | | |  | |  |     |  ||   ||| |   
GTGGTGATGCTTGGATTGGACGCGGCAGGCAAAACCACCATTCTCTATAAGCTGCATATTGGAGAGATTTTGTCCACAGTCCCCACCATCGgtaatttgacttatcacttgtagtcaatccttcatttttttggtagtgcgcctcttcgtttctgagtatagatggcactgttgttttatacaatgttgcaaccgtatttcctgccaagtgcatgtgagtgtttttgagggtaacatctgttgctaaattacattttccattcaattttcag

upper sequence: GRMZM2G011518_T03 (Zea mays), 5'ss of exon 2
lower sequence: PP1S47_298V6.1 (Physcomitrella patens), 5'ss of exon 2
GTGGTGATGCTTGGGTTGGATGCAGCTGGGAAAACCACCATACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgt---ccgattgtac-cacctatctg---cttgtgcatttcataa-----cttttggtttcaacca--ttgctaattacagttgtccaactctgc---acctgccatgcaatt--gattcgtccgttcatatgtttagtgac-agcatgcactttatcacattgtag------------------
|||||||||||||| ||||| || || || ||||| ||||| |||||||||||||| || || ||  |||| ||||| || |||||||| |||     || |  || |  | |  ||   ||| || |||| | |      || || |||||  |    ||| |   |    || |   ||  ||       ||   |   |||  |  |||   | |  |   |||  |  | || |||   ||| | |  |||| |                  
GTGGTGATGCTTGGATTGGACGCGGCAGGCAAAACTACCATTCTCTATAAGCTTCATATCGGGGAGATTCTATCCACCGTTCCTACCATTGgtagcttgacttaacacttccagttgatccttttgtatttgaaagagcccctcttcgtttctgcttatttgatgtatttgcttatttgacggtgttttgtttgatgtattattctgtgtcgagtgctggtgaatttgctttcgaggatgtcatttgttaagttgttgtggttatgcaatattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211532195|gb|FL238607.1|FL238607
EST:     ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAG                         GTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
genomic: ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgt ... cacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
EST: gi|74243860|gb|DT651774.1|DT651774
EST:     ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAG                         GTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
genomic: ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgt ... cacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
EST: gi|211532186|gb|FL238598.1|FL238598
EST:     ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAG                         GTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
genomic: ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgt ... cacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
EST: gi|211535184|gb|FL238611.1|FL238611
EST:     ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAG                         GTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCA
genomic: ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgt ... cacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCA
EST: gi|211532185|gb|FL238597.1|FL238597
EST:     ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAG                         GTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
genomic: ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgt ... cacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
EST: gi|211535181|gb|FL238608.1|FL238608
EST:     ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAG                         GTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTG
genomic: ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgt ... cacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTG
EST: gi|211532189|gb|FL238601.1|FL238601
EST:     ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAG                         GTTTCAATGTTGAGAAGGTTCAATACAAGAATGTWGTGTTCACCGTGTGGG
genomic: ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgt ... cacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
EST: gi|211532184|gb|FL238596.1|FL238596
EST:     ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAG                         GTTTCAATGTTGAGAAGGTTCAGTACAAGAATGTAGTGTTCACCGTGTGGG
genomic: ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgt ... cacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
EST: gi|113667114|gb|DW831326.1|DW831326
EST:     ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAG                         GTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
genomic: ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgt ... cacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
EST: gi|76932677|gb|DV173113.1|DV173113
EST:     ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAG                         GTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG
genomic: ACTCTATAAGCTTCACATTGGTGAAGTTCTCTCCACTGTCCCTACCATAGgtccgattgt ... cacattgtagGTTTCAATGTTGAGAAGGTTCAATACAAGAATGTAGTGTTCACCGTGTGGG