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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAACAAGATACTGGATGAAGTACCAAGAATCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATAgtatattgctggcctatcattatccctgttattgcagatataaatatacaaaagctgaaatttacagagaacctcatccaagcgaacataatgccttatgactgacctgctgatgaccatttctggtctattgcaacctgcag

Basic information

species Zea mays
transcript GRMZM2G010871_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010871_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g28340.3 (Oryza sativa), 5'ss of exon 2
ATGGAACAAGATACTGGATGAAGTACCAAGAATCAGATTGTTTT-GTTCTAGAAGACTCTACTGACCACCTTCACATGCTATAgtatattgctggcctatcattatccctgttattgcagatataaatatacaaaagctgaaatttacagagaacctcatccaagcgaacataatgccttatgactgacctgctgatgaccatttctggtctattgcaacctgcag
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| ||| |||| |||| || ||| |  || ||  |        | |||    |||| || |  || |    |        || ||  | || |    |||       |    ||| |||    |||   || | ||    |||  || || |||
ATGGAACAAGATACTGGATGAAGTAC-AAGAACCAGATTGTTTTTGTTCTAGAAGACTCAACTGATCACCTTCAAATGATATAATATACTGATGgtcattctttcactaaaaagctacagtctaaaatctagagcagttatcct--------aatct--ttcacgttggcatg------tgcatctggccttacaatggtgatgtttgtctcattaaaatctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148972976|gb|EE024011.2|EE024011
EST:     TCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATA                         GGCTTCAGAAAGGTTGATCCTGACAGGTGGGGAGTTTGCAAATGAAGGTTT
genomic: TCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATAgtatattgct ... caacctgcagGGCTTCAGAAAGGTTGATCCTGACAGGTGGG-AGTTTGCAAATGAAGGTTT
EST: gi|149016773|gb|EE045614.2|EE045614
EST:     TCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATA                         GGCTTCAGAAAGGTTGATCCTGACAGGTGGGAGTTTGCAAATGAAGGTTTC
genomic: TCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATAgtatattgct ... caacctgcagGGCTTCAGAAAGGTTGATCCTGACAGGTGGGAGTTTGCAAATGAAGGTTTC
EST: gi|148948713|gb|EC898631.2|EC898631
EST:     TCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATA                         GGCTTCAGAAAGGTTGATCCTGACAGGTGGGAGTTTGCAAATGAAGGTTTC
genomic: TCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATAgtatattgct ... caacctgcagGGCTTCAGAAAGGTTGATCCTGACAGGTGGGAGTTTGCAAATGAAGGTTTC
EST: gi|149083440|gb|EE172761.2|EE172761
EST:     TCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATA                         GGCTTCAGAAAGGTTGATCCTGACAGGTGGGAGTTTGCAAATGAAGGTTTC
genomic: TCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATAgtatattgct ... caacctgcagGGCTTCAGAAAGGTTGATCCTGACAGGTGGGAGTTTGCAAATGAAGGTTTC
EST: gi|71447097|gb|DR828147.1|DR828147
EST:     TCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATA                         GGCTTCAGAAAGGTTGATCCTGACAGGTGGGAGTTTGCAAATGAAGGTTTC
genomic: TCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATAgtatattgct ... caacctgcagGGCTTCAGAAAGGTTGATCCTGACAGGTGGGAGTTTGCAAATGAAGGTTTC