Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATCGCTGTCATGGGGCATGTTGGCCTCACACCGCAAGCTATTAGTGTTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgctagctgctcattatgtttgtggcttggttatatttgttgctacacatttggtgctggtgcgctgactgactggtagggtctcactccatgctattgtgcttgtgtag

Basic information

species Zea mays
transcript GRMZM2G010596_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010596_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g12560.1 (Oryza sativa), 5'ss of exon 2
TGGAATCGCTGTCATGGGGCATGTTGGCCTCACACCGCAAGCTATTAGTGTTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgctagctgctcattatgtttgtggcttggttatatttgttgctacacatttggtgctggtgcgctgactgactggtagggtctcactccatgctattgtgcttgtgtag
|||||||||||| |||||||||||||| ||||| ||||| |||||||| || || ||||||||| | || ||||| ||||||||||| |||||| | ||||| ||  | |  ||  | ||| |||| ||  ||||| | | |    || | ||  ||   |  |  ||    || |  |         | ||  |  | ||  | || ||||||||
TGGAATCGCTGTAATGGGGCATGTTGGGCTCACGCCGCAGGCTATTAGCGTGCTTGGTGGATTTCGACCACAAGGAAAGACGGTTGATAGTGCTGTGAAGgtgtg--gtt--ctcttgattttgttggttacttggctct-tagcctgattcatgttctttcttcatgtatagatttgc---------cccatgctgttctgct-tgtttgtgtag

upper sequence: GRMZM2G010596_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv15s0046g02170.t01 (Vitis vinifera), 5'ss of exon 2
TGGAATCGCTGTCATGGGGCATGTTGGCCTCACACCGCAAGCTATTAGTGTTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgctagctgctcattatgtttgtggcttggttatatttgttgctacacatttggtgctggtgcgctgactgactggtagggtctcactccatgctattgtgcttgtgtag
|||||| ||||| ||||| ||||| || || || || || || || |||||||| || |||||||||||||||||||| |   |||  |||||| | |||||    | ||  |   |  |  | || | || ||    || |        | | ||     | || ||    ||        ||   ||    |  |     ||    ||| | ||
TGGAATTGCTGTAATGGGTCATGTGGGACTTACCCCTCAGGCCATAAGTGTTCTTGGGGGATTTAGGCCTCAAGGGAAAAATATTGCTAGTGCTGTCAAGgtccttctctttccatttgtattcttgggggatttaggat-tcaaaaaaaatatatcgttaggtgctgtcaagatctctctctaaaatccatgttgaattggtttgatttgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76925029|gb|DV170255.1|DV170255
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|50331355|gb|CO526481.1|CO526481
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|149096806|gb|EE182592.2|EE182592
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|87155899|gb|DY400688.1|DY400688
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|149100426|gb|EE186501.2|EE186501
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACATTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|76014403|gb|DT941573.1|DT941573
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|26559302|gb|CA831537.1|CA831537
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|148971954|gb|EE022743.2|EE022743
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCCTTGCAGGAGGCTGGATGCTTCTCGGTTGT
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCC-TTGCAGGAGGCTGGATGCTTCTCGGTTGT
EST: gi|148963379|gb|EE014384.2|EE014384
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|78114103|gb|DV532492.1|DV532492
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|26559395|gb|CA831630.1|CA831630
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCA
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCA
EST: gi|74234160|gb|DT642074.1|DT642074
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|78092454|gb|DV520828.1|DV520828
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|22542195|gb|BU092633.1|BU092633
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|71432258|gb|DR813308.1|DR813308
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|149112326|gb|EE295217.2|EE295217
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|71762021|gb|DR959958.1|DR959958
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|74234159|gb|DT642073.1|DT642073
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|148986222|gb|EE029970.2|EE029970
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|76925026|gb|DV170254.1|DV170254
EST:     TCCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|148949339|gb|EC894793.2|EC894793
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|148949338|gb|EC894792.2|EC894792
EST:     GCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: GCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|74245889|gb|DT653803.1|DT653803
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|50326185|gb|CO521311.1|CO521311
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|91051986|gb|EB162404.1|EB162404
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|76010637|gb|DT937807.1|DT937807
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|50331354|gb|CO526480.1|CO526480
EST:     GGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: GGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|71311050|gb|DR791837.1|DR791837
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|148981405|gb|EE027629.2|EE027629
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|50326633|gb|CO521759.1|CO521759
EST:     GATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: GATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|78114102|gb|DV532491.1|DV532491
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|211281935|gb|FL354664.1|FL354664
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|71766837|gb|DR964774.1|DR964774
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|76291247|gb|DV030815.1|DV030815
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGGTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|71431855|gb|DR812905.1|DR812905
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|22546513|gb|BU098824.1|BU098824
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|76929700|gb|DV172121.1|DV172121
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCANGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|148986221|gb|EE029969.2|EE029969
EST:     ATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: ATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|71447311|gb|DR828361.1|DR828361
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGG
EST: gi|91049383|gb|EB159801.1|EB159801
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|71448702|gb|DR829752.1|DR829752
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG
EST: gi|148981404|gb|EE027628.2|EE027628
EST:     TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAG                         GTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTTTCGGTTGTG
genomic: TTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 25

TGGAATCGCTGTCATGGGGCATGTTGGCCTCACACCGCAAGCTATTAGTGTTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTGTTGGAGTGTGTGCCTGCTCCAGTGGCAGCAGCTGCAACATCAGCATTGA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 38

TGGAATCGCTGTCATGGGGCATGTTGGCCTCACACCGCAAGCTATTAGTGTTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTGTTGGAGTGTGTGCCTGCTCCAGTGGCAGCAGCTGCAACATCAGCATTGA


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 33

TGGAATCGCTGTCATGGGGCATGTTGGCCTCACACCGCAAGCTATTAGTGTTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTGTTGGAGTGTGTGCCTGCTCCAGTGGCAGCAGCTGCAACATCAGCATTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 82

TGGAATCGCTGTCATGGGGCATGTTGGCCTCACACCGCAAGCTATTAGTGTTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgct ... gcttgtgtagGTTGTGGAGACAGCACTTGCCTTGCAGGAGGCTGGATGCTTCTCGGTTGTGTTGGAGTGTGTGCCTGCTCCAGTGGCAGCAGCTGCAACATCAGCATTGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAATCGCTGTCATGGGGCATGTTGGCCTCACACCGCAAGCTATTAGTGTTCTCGGTGGATTTAGGCCTCAAGGGAAGACGGTTGACAGTGCTATAAAGgtttgccgctagctgctcattatgtttgtggcttggttatatttgttgctacacatttggtgctggtgcgctgactgactggtagggtctcactccatgctattgtgcttgtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA