Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211369554|gb|FL313255.1|FL313255EST: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGG ATGGACCCCAAG
genomic: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAG
EST:
gi|116829168|gb|EC865159.1|EC865159EST: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAATGGG ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAG
genomic: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAG
EST:
gi|211200178|gb|FL316755.1|FL316755EST: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGG ATGGACCCCAAGTTCCTGAAGAACCTGAGGTATTCAAGGAAGGGCAACAAG
genomic: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAG
EST:
gi|161586782|gb|EY954754.1|EY954754EST: CGGCAGACCTCCACCAAGGGG ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAG
genomic: CGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAG
EST:
gi|5706217|gb|AI941993.1|AI941993EST: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGG ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAG
genomic: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAG
EST:
gi|211366908|gb|FL313254.1|FL313254EST: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGG ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAG
genomic: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAG
EST:
gi|116817813|gb|EC860723.1|EC860723EST: GAACGGCATCGAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGTG ACGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGACAACAA
genomic: GAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGG-Ggtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAA
EST:
gi|211200179|gb|FL316756.1|FL316756EST: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGG ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAG
genomic: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAG
EST:
gi|211416484|gb|FL311420.1|FL311420EST: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGG ATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTC
genomic: AGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
502GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAGAAGAGTGGTGAGGCTGAGGAGTAGGAAGGAAAGCATGGTTGTGTTTCCT
Block sizes:
47 (upstream exon),
49 (downstream exon)
Score:
326GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAGAAGAGTGGTGAGGCTGAGGAGTAGGAAGGAAAGCATGGTTGTGTTTCCT
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
197GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAGAAGAGTGGTGAGGCTGAGGAGTAGGAAGGAAAGCATGGTTGTGTTTCCT
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
402GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgat ... atgtttgcagATGGACCCCAAGTTCCTGAGGAACCTGAGGTATTCAAGGAAGGGCAACAAGAAGAGTGGTGAGGCTGAGGAGTAGGAAGGAAAGCATGGTTGTGTTTCCT