1 5' 3' | 2 5' 3' | 3 5' 3' |
CTCTGGTGCAACTTCTGCAAACTGCTGAATTTGACATCAAGAAAGAAGCAGCCTGGGCAATTTCAAATGCCACTTCTGGTGGCACACATGATCAGATCAAgtatgtaaatatctggttttaactttatcttcttagttcgttgtgttatttgtagtagtgtgcttcatcattttattttttatttgtgataacattggctactttataaaatgtag
species | Zea mays |
transcript | GRMZM2G009845_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCACTTCTGGTGGCACACATGATCAGATCAA GTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTGEST: gi|13126437|gb|BG317007.1|BG317007
genomic: GCCACTTCTGGTGGCACACATGATCAGATCAAgtatgtaaat ... taaaatgtagGTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTG
EST: GCCTGGGCAATTTCAAATGCCACTTCTGGTGGCACACATGATCAGATCAA GTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTGEST: gi|60340999|gb|DN207972.1|DN207972
genomic: GCCTGGGCAATTTCAAATGCCACTTCTGGTGGCACACATGATCAGATCAAgtatgtaaat ... taaaatgtagGTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTG
EST: GCCACTTCTGGTGGC-CACATGATCAGATCAA GTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTG
genomic: GCCACTTCTGGTGGCACACATGATCAGATCAAgtatgtaaat ... taaaatgtagGTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGGTGCAACTTCTGCAAACTGCTGAATTTGACATCAAGAAAGAAGCAGCCTGGGCAATTTCAAATGCCACTTCTGGTGGCACACATGATCAGATCAAgtatgtaaatatctggttttaactttatcttcttagttcgttgtgttatttgtagtagtgtgcttcatcattttattttttatttgtgataacattggctactttataaaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA