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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcggatcttatgtacagttaccttttccggatggacagtttggtggtgagatttgcgcgatttgtcgagtagtattaggccatgcgtgagggc...

Basic information

species Zea mays
transcript GRMZM2G009845_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009845_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g06350.1 (Oryza sativa), 5'ss of exon 2
CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcggatcttatgtacagttacctt---ttccggatggacagtttggtg-gtgagatttgcgcgatttgtcgagtagtattaggccatgcgtgagggc
 | || || |||||||||||||| ||||| || || ||| |||||  | | |||||||| |||||||||||||||||| |||||||||||||||| |||||||||  |||||  | |   |  |||      |  |||||||  ||||| ||  | |    |   || | | |      | ||||    ||   |||||  
TTGGAGGGGTTGCCGGCGATGGTGCAGGCGGTGCAGTCCGACGACAGCGCCGTGCAGCTGGAGGCCACCACGCAGTTCCGGAAGCTGCTCTCCATCGgtgaggtttcgatctcctctctcgggaccgcgagatttggatggat-gtttgttgtatcactcgttgacgttctattatacgggattaa--tattattgagga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211002610|gb|FL253498.1|FL253498
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTACCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211005402|gb|FL253522.1|FL253522
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211008170|gb|FL253527.1|FL253527
EST:     CACTGTGCAGCTTGAGCCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211376202|gb|FL253487.1|FL253487
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211002620|gb|FL253508.1|FL253508
EST:     CACTGTGCAGCTTGAGGCCACCACGCA-TTCAGGAAGCTGCTCTCCATAG                         AGCGTARTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211005393|gb|FL253513.1|FL253513
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|9952266|gb|BE638849.1|BE638849
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211224826|gb|FL228411.1|FL228411
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCC
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCC
EST: gi|148966362|gb|EE017351.2|EE017351
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211376204|gb|FL253489.1|FL253489
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211008169|gb|FL253526.1|FL253526
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|67031523|gb|CO460272.1|CO460272
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211010947|gb|FL253540.1|FL253540
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211002616|gb|FL253504.1|FL253504
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211005398|gb|FL253518.1|FL253518
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211224828|gb|FL228413.1|FL228413
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211220703|gb|FL228389.1|FL228389
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211376205|gb|FL253490.1|FL253490
EST:     ACTTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: ACT-GTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|60345381|gb|DN212354.1|DN212354
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211008171|gb|FL253528.1|FL253528
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211008175|gb|FL253532.1|FL253532
EST:     CACTGTGCAGCTAGAAGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211376203|gb|FL253488.1|FL253488
EST:     CACTGTGCAGCTTGAGGNCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGA-CAGCACAGGAGTCGTGCCC-GAA
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGA-
EST: gi|211010949|gb|FL253542.1|FL253542
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211002617|gb|FL253505.1|FL253505
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211002615|gb|FL253503.1|FL253503
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCC
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCC
EST: gi|211010948|gb|FL253541.1|FL253541
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211002621|gb|FL253509.1|FL253509
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211005396|gb|FL253516.1|FL253516
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211224823|gb|FL228408.1|FL228408
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|74241129|gb|DT649043.1|DT649043
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211224831|gb|FL228416.1|FL228416
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAA                         AGCGTACTCCCCCAGTTGAACAGGGGATCAGCAAAGGGAGTCCTGCCCC
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGG-AGTCGTGCCCC
EST: gi|211005394|gb|FL253514.1|FL253514
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGNNNNNNNAATTGAAGAGGTGATCAGCACAGGAGT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCC-AATTGAAGAGGTGATCAGCACAGGAGT
EST: gi|211224824|gb|FL228409.1|FL228409
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGGGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211376209|gb|FL253494.1|FL253494
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTTGAAGAGGTGATCAGCACAGGAGTCGTGCCC-GA
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATT-GAAGAGGTGATCAGCACAGGAGTCGTGCCCCGA
EST: gi|211005392|gb|FL253512.1|FL253512
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211008178|gb|FL253535.1|FL253535
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211002611|gb|FL253499.1|FL253499
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAAGAGGTGATCAGCACAGGAGTCGTGCCCCGA
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAA-GAGGTGATCAGCACAGGAGTCGTGCCCCGA
EST: gi|211220699|gb|FL228385.1|FL228385
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211220701|gb|FL228387.1|FL228387
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCC
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCC
EST: gi|211008181|gb|FL253538.1|FL253538
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|76926668|gb|DV170963.1|DV170963
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211224830|gb|FL228415.1|FL228415
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211376212|gb|FL253497.1|FL253497
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211010951|gb|FL253544.1|FL253544
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211010950|gb|FL253543.1|FL253543
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAAATGAAAGAG-TGATCAGCACAGGAGTCGTGCCCCGA
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAA-GAGGTGATCAGCACAGGAGTCGTGCCCCGA
EST: gi|148991022|gb|EE032463.2|EE032463
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211222761|gb|FL228395.1|FL228395
EST:     ACTGTGCAGCTTGAGGCCACCACGCGAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: ACTGTGCAGCTTGAGGCCACCACGC-AGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211005397|gb|FL253517.1|FL253517
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAAGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211224829|gb|FL228414.1|FL228414
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCAAATTGGAAGAGGTGGATCAGCACAGGAGTCGTGCCCCG
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTG-AAGAGGTG-ATCAGCACAGGAGTCGTGCCCCG
EST: gi|32849173|gb|CD988854.1|CD988854
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGCCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211220697|gb|FL228383.1|FL228383
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211222770|gb|FL228404.1|FL228404
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211002613|gb|FL253501.1|FL253501
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211002614|gb|FL253502.1|FL253502
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCC
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCC
EST: gi|148994071|gb|EE033948.2|EE033948
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211222769|gb|FL228403.1|FL228403
EST:     CACTGTGCAGCTTGAGCCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCAAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211220695|gb|FL228381.1|FL228381
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|211376207|gb|FL253492.1|FL253492
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|148952930|gb|EE152401.2|EE152401
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCGAT
EST: gi|110533381|gb|EE037561.1|EE037561
EST:     CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG                         AGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCCCGA
genomic: CACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcg ... atttctctagAGCGTAGTCCCCCAATTGAAGAGGTGATCAGCACAGGAGTCGTGCCCC-GA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAGgtgaggttcggatcttatgtacagttaccttttccggatggacagtttggtggtgagatttgcgcgatttgtcgagtagtattaggccatgcgtgagggc

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT