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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag

Basic information

species Zea mays
transcript GRMZM2G009412_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagta-tacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaa-gactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| ||    | |   ||| ||||| | | | || |   |    |     ||| ||| | ||   |   ||   ||  | || |||       || || | |||  |||||                                            
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGTAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtactgtgacagtttatatatgattatgc-agtgttgtgtgtgac-----tctctgttcattagaaacatatggtgtcatgattgatg-----tatcagtgctatgtgtct--------------------------------------------

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g33898.1 (Oryza sativa), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagta-tacctatgtgattgtactattgctccat-caatccttcatctttgtc------------cgttttgat---------gctagcatgaaagactgaaaataactaccat----ttctaa-atgtctg----ttgg--gtgcacagattgggatatgacaaatg-ttgtgattttcag
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| ||    | |   |||||||||   | | ||||   |   ||  |   ||||  |              ||  ||||            |     ||    ||  |||||| | |||    || |||  | ||||    |  |  |||||    |   | ||||| | ||| ||    |||||||
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGTAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtattgtgacagtttatatgtgattacgc-agtgctgtgtgtgattgtctctcttcattagaaacatatggtgtcatgatttgtgtctgttcaatgcaaacatgtggcaataaccatcatgtagttttaatgtatctgactttcagctgtgcatttttcatgttatgatacatggttcctgttttcag

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagta-tacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttg-atgctagcatgaaagac-tgaaaataactaccatttcta-aatgtctgttgggtgcacagattgggatatgacaaatgt-tgtgattttcag------------------------------------------
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| ||    | |   ||| ||||| | | | || |   |    |  || | ||  |  |    | | | |  |||||  ||  |   | | |      | | || ||||  ||| ||    |   ||   |   |   || ||  ||||  ||||||                                          
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGAAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtactgtgacagtttatatatgattatgc-agtgttgtgtgtgactctc-tgttcattagaaacgtacggtgtcatgattgatgtagcagtgatatgtgtctgtacaatgcatgt-ggcaataaccatcacgtagttttaattgcatgtggctttcagctgtgcatttttcatgttatgatacatggttcctgttttcag

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag
||||||||| ||||| ||| |  | || |||||||| ||||||||||||||||| ||||| || || ||||||||||| |||||||| |||||||| ||||||        |  |  |   | |||  |     |||  ||| |  |    ||||    ||||| | |||   |      ||  || ||| ||                                                            
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgta------cgtcgccttactactgt--ttcccttcccccaaacactgccttttgat--ttttgttcctaatttac----ctttaattaattag-----------------------------------------------------------

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaag-actgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag
||||||||||||||||||| |  ||||||| ||||| ||||||||||| ||||| || || || |||||||| || || ||||| |||||||||||||||||      || ||  ||| |  || ||  | |||      | |      | ||| |   |  |||    |  ||      | | ||||||                                                                
CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt-taaatatttcgttata--agtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatag---------------------------------------------------------------

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaa--tgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag
|||||||||||| |||||| |  ||||||| ||||| |||||||| || ||||| || || || ||||| || || || ||||| |||||||||||||||||||  |   ||  ||||| |||    ||  | |      |   |       |     |  ||||  |  ||       ||                                                                          
CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctctcgttaacctaagtg--cataggaattaggagtttttttcctgacaaaaacatttttatttttaattgattag--------------------------------------------------------------------------

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G24930.1 (Glycine max), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag
||||||||| ||||| ||| |  | || |||||||| ||||||||||||||||| ||||| || || ||||||||||||||||| || |||||||| ||||||                  ||| |||| || | ||   ||  || | |  | ||   | ||| |  ||   |          || ||| ||                                                            
CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACCAAGCCCGTTTTCCACAAAAAGgta----------------caattctactgtttcccc-caaacactgccttatggtttttattgctaataatttacttttaattaattaattag-----------------------------------------------------------

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgtt-gtgattttcag------
 ||||| ||||| ||||||||  ||||||| |||||||| |||||||| || || || || || ||||| || ||||||||||| ||||||||||||||||||      ||  |   | |  ||||  |  |     || |  |  || ||| |||  |     ||    |  |  |  | |||   |    |  || |||   | |  |   | |      |||||    ||   | | || ||  || |  |      
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgta------tactcgcttttccttgtcttgatctctaatta--ctgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtct---tataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgc--tagcatgaaaga-ctgaaaataactaccatttctaaatgtctgttgggtgcacaga-------------------ttgggatatgacaaatgttgtgattttcag------
|||||||||||| || || ||  |||| || |||||||| ||||||||||| || || || || |||||||| ||||| ||||||||||||||||| |||||||    |  || | |||  |||| | | ||  | ||       ||     | ||  |||   |||   |||  | || || |     |||       |||  || ||     || |   |||||                   ||||  |  || | || |||||| | |         
CAAGAAGGGTAAAGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTGTCTTCCACAAAAAGgtaacattgattatc-atgc-attg-attgttttttcagtttgaattaggtctagttagttgaaatgaggtagttttaaggaaccatttatagtagaattttggaagtgagctgtgaggaaacagacattccaatagtctcagttttggactgagatacatcttgtgaatcttgttaacag

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv01s0011g02090.t01 (Vitis vinifera), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactg-aaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgt-tgtgattttcag-----
|||||||||||| |||||| |  ||||||| ||||||||| | || |||||||| || ||||| ||||| || ||||| || || ||||||||||||||||||| ||    |  || ||  ||| | || || ||    ||||  |  ||  ||    ||||   |  ||    || ||  || |  ||   |   || | ||   |    ||    |  || ||    |||  |   ||   | |  || |||      
CAAGAAGGGTAAAGATAGCTTAGCTGCCCAAGGAAAGCGCAGGTACGACCGCAAACAATCAGGTTATGGAGGACAGACAAAACCCGTCTTCCACAAGAAGgtaaagaccctt-tctctggcattctcctcttccttg--caattatcaattgtttcatgtttc--ttataatgagagagcttgtaggatttttcaaatctgtagtagaagcttataagggcaaatccccatagcattgatccatctttttctcaaaccag

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 5'ss of exon 2
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag
||||||||| ||||||||| |  | || || || |||||  | ||||| ||||| |||||||| ||||| || |||||||| || ||||||||||| |||||||      | |||    | ||   ||| |  |||      |  || |  ||||     | | ||      ||       |||| || | |   |||||      | |  || |                                      
CAAGAAGGGCAAGGATAGCTTAGCCGCACAAGGGAAGCGGAGGTATGATCGCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaa------acaccc---tcatctcact-tccctcggcatcttttttagatttgaataatctaatctggttattt----ttgaacatga-tctaatttcatgtaatataatgag--------------------------------------

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag
|||||| || || ||||||||  | |||||||| || ||||| ||||| || || |||||||| ||||| || |||||||| |||||||||||||| |||||||  |  |  | |||| |  || |    |||     |  | || |  | ||     || | ||| ||    | | ||| ||  | | |      | | |       | |      |   |||||   |    | |||    | ||      
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaa--tccatctatatccttatttccttggaaattttaaccctttttttaagttgtgt-gatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag---

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: EDP05070 (Chlamydomonas reinhardtii), 5'ss of exon 3
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag
                                | |||||||| || |||||||||||||| || || ||||| ||||||||||| |||||||||||||||||   |    | | ||         |  ||| |        ||| |  |    || ||||   |  |   |  ||      |||   | | | |     |  |  |  ||                                           
--------------------------------GCAAGCGCCGCTACGACCGCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtg-cgcgacagagctggcgcggcatgttatgggcgt----atcttgaagtggtgaccgtggaggggtgggggtgggg---tgaggctgagtgctggcgc--agcggatg-------------------------------------------

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S22_326V6.1 (Physcomitrella patens), 5'ss of exon 3
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag
                                | ||| |  | |||||| | || || |||||||| || || |||||||||||||||||||||||||||||| ||  |  ||             |  |   |   || || | |      ||  |  |    ||  ||| |||     ||    |   || | || ||    | | ||||  |||                                    
--------------------------------GTAAGAGGAGATATGACAGGAAACAATCAGGATACGGAGGTCAGACCAAGCCTGTCTTCCACAAGAAGgta-tgttgcgta-------------atcagcacctgatgaagcatgggcagttcactctcagaattttaggatgt----ctcgtcaatcctgctatctcagtgtttgtgtttcgtgt-----------------------------------

upper sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 3
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgt-aatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag
                                | ||| | ||||||||| | ||||| || || || || || ||||||||||||||||| ||||||||||| |    |     | ||   |     |  |||  || |  | |  ||  ||||| ||  ||     |    | ||    | |     ||| |   ||| || ||                                                 
--------------------------------GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttactcgtcatgagaatt--tctaatactagttt-tctttatcgcttacagcgt--acttgctttatttcggttaaattttattgctgaa-------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4646348|gb|AI621678.1|AI621678
EST:     GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAG                         GCCAAGACCACCAAGAAAATCGTATTGAAGCTGCAGTGC
genomic: GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagt ... tgattttcagGCCAAGACCACCAAGAAAATCGTATTGAAGCTGCAGTGC
EST: gi|211413907|gb|FK968114.1|FK968114
EST:     GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAG                         GCCAAGACCACCAAGAAAATCGTGTTGAAGCTGCAGTGCCAGAGCTGCAAG
genomic: GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagt ... tgattttcagGCCAAGACCACCAAGAAAATCGTATTGAAGCTGCAGTGCCAGAGCTGCAAG
EST: gi|32913975|gb|CF018787.1|CF018787
EST:     GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAG                         GCCAAGACCACCAAGAAAATCGTGTTGAAGCTGCAGTGCCAGAGC
genomic: GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagt ... tgattttcagGCCAAGACCACCAAGAAAATCGTATTGAAGCTGCAGTGCCAGAGC
EST: gi|116826622|gb|EC870429.1|EC870429
EST:     GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAG                         GCCAAGACCACCAAGAAAATCGTATTGAAGCTGCAGTGCCAGAGCTGCAAG
genomic: GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagt ... tgattttcagGCCAAGACCACCAAGAAAATCGTATTGAAGCTGCAGTGCCAGAGCTGCAAG
EST: gi|211511551|gb|FL285070.1|FL285070
EST:     GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAG                         GCCAAGACCACCAAGAAAATCGTGTTGAAGCTGCAGTGCCATGAGCTGCAA
genomic: GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagt ... tgattttcagGCCAAGACCACCAAGAAAATCGTATTGAAGCTGCAGTGCCA-GAGCTGCAA
EST: gi|32863442|gb|CF003124.1|CF003124
EST:     GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAG                         GCCAAGACCACCAAG
genomic: GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagt ... tgattttcagGCCAAGACCACCAAG
EST: gi|166506113|gb|EG044282.1|EG044282
EST:     GCAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAG                         GCCAAGACCACCAAGAA
genomic: GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagt ... tgattttcagGCCAAGACCACCAAGAA
EST: gi|116822004|gb|EC865370.1|EC865370
EST:     GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAG                         GCCAAGACCACCAAGAAAATCGTATTGAAGCTGCAGTGCCAGAGCTGCAAG
genomic: GCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagt ... tgattttcagGCCAAGACCACCAAGAAAATCGTATTGAAGCTGCAGTGCCAGAGCTGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG